View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19548_low_4 (Length: 391)

Name: NF19548_low_4
Description: NF19548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19548_low_4
NF19548_low_4
[»] chr5 (13 HSPs)
chr5 (14-376)||(7164097-7164457)
chr5 (131-264)||(1145793-1145926)
chr5 (117-205)||(17644501-17644591)
chr5 (141-205)||(40266534-40266598)
chr5 (215-276)||(25759856-25759917)
chr5 (215-276)||(25787842-25787903)
chr5 (218-263)||(33037385-33037430)
chr5 (215-265)||(40266589-40266639)
chr5 (215-264)||(1145169-1145218)
chr5 (164-205)||(17344802-17344843)
chr5 (193-262)||(40266401-40266470)
chr5 (214-274)||(7826128-7826188)
chr5 (162-194)||(36580302-36580334)
[»] chr7 (10 HSPs)
chr7 (144-210)||(149036-149102)
chr7 (191-297)||(26009368-26009470)
chr7 (170-276)||(23345002-23345108)
chr7 (144-205)||(28139384-28139445)
chr7 (237-296)||(28138759-28138814)
chr7 (215-261)||(28139436-28139482)
chr7 (164-205)||(16984391-16984432)
chr7 (144-205)||(18146190-18146251)
chr7 (231-276)||(25428747-25428792)
chr7 (165-205)||(19931954-19931994)
[»] chr3 (7 HSPs)
chr3 (188-264)||(35105960-35106031)
chr3 (164-265)||(2652368-2652469)
chr3 (188-264)||(50663903-50663979)
chr3 (216-276)||(8150185-8150245)
chr3 (170-205)||(26998262-26998297)
chr3 (215-265)||(40517001-40517051)
chr3 (164-205)||(3540183-3540224)
[»] chr2 (5 HSPs)
chr2 (146-265)||(9539010-9539129)
chr2 (215-296)||(12965049-12965126)
chr2 (90-205)||(12965117-12965238)
chr2 (170-205)||(28360093-28360128)
chr2 (145-205)||(41101215-41101275)
[»] chr1 (7 HSPs)
chr1 (162-212)||(5603128-5603178)
chr1 (164-205)||(10884458-10884499)
chr1 (164-205)||(42883723-42883764)
chr1 (189-265)||(5602971-5603047)
chr1 (185-264)||(9862863-9862942)
chr1 (105-178)||(4329008-4329081)
chr1 (165-205)||(13280754-13280794)
[»] chr6 (5 HSPs)
chr6 (136-197)||(807124-807185)
chr6 (219-264)||(14830420-14830465)
chr6 (218-264)||(31522539-31522585)
chr6 (219-264)||(17436546-17436591)
chr6 (237-265)||(14153381-14153409)
[»] chr8 (6 HSPs)
chr8 (189-262)||(3588370-3588443)
chr8 (215-265)||(3588546-3588596)
chr8 (215-276)||(1349063-1349124)
chr8 (141-205)||(3588493-3588555)
chr8 (144-205)||(32035816-32035877)
chr8 (144-212)||(15908953-15909021)
[»] chr4 (2 HSPs)
chr4 (229-265)||(24974161-24974197)
chr4 (141-205)||(37999472-37999536)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 7164457 - 7164097
Alignment:
Q  14 agaggaagagtagcaaaatacatatatgaaagcaaccattcaaaaatcatgggtgttcaatgtgtgttaaatcggatgaaacaaaatcaaacgtgagtta 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7164457 agaggaagagtagcaaaatacatatatgaaagcaaccattcaaaaatcatgggtgttcaatgtgtgttaaattggatgaaacaaaatcaaacgtgagtta 7164358  T
Q  114 acacacgttggattttagt--gtgttttttctgcgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaacccatgc 211  Q
    || |||||||| |||||||  ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  7164357 actcacgttgggttttagtgtgtgttttttctgcgtgacttaagtcacgcggcgtgaattaactcatgcaaatttaacattagcgtgagttaatccatgc 7164258  T
Q  212 aatgtgagttaacttatgtagggacattttggtcatttactttgggaatgagcagaaacgtttggttgggtaaagagcagaattcgtggactattaacta 311  Q
    || ||||||||||| |||||| | ||||||||||||||||||| |||||||||||||||||    || ||||||||||||||||||||||||||||||||    
T  7164257 aacgtgagttaactcatgtagaggcattttggtcatttactttaggaatgagcagaaacgt----ttaggtaaagagcagaattcgtggactattaacta 7164162  T
Q  312 aggtgatttggactaaatatttgggcctaattctggatttatgtatagaaccatattgttagaga 376  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  7164161 aggtgatttggactaaatatttgggcctaaatctggatttatgtatagaaccatattattagaga 7164097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 1145793 - 1145926
Alignment:
Q  131 gtgtgttttttctgcgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaacccatgcaatgtgagttaacttatgt 230  Q
    |||| |||||||||||||||||||| ||| || ||||| ||||||||||||||||| ||| ||||||||||||||  ||| |  || |||||||| ||||    
T  1145793 gtgtattttttctgcgtgacttaagacacgcagcgtgagttaactcatgcaaattttacattagcgtgagttaactaatgtagcgtaagttaactcatgt 1145892  T
Q  231 agggacattttggtcatttactttgggaatgagc 264  Q
    | || ||||||| |||||||||||||||||||||    
T  1145893 aagggcattttgatcatttactttgggaatgagc 1145926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 17644501 - 17644591
Alignment:
Q  117 cacgttggattttagtgtgt--tttttctgcgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    ||||| || |||||||||||  ||||||||||||| ||||||||| || ||||| |||||||||| |||||||||||||||||||||||||    
T  17644501 cacgtcgggttttagtgtgtgatttttctgcgtgatttaagtcacgcagcgtgagttaactcatgtaaatttaacactagcgtgagttaac 17644591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 40266534 - 40266598
Alignment:
Q  141 tctgcgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    |||||||||||||||||||  | ||||| |||||||| |||||||||||| ||||||||||||||    
T  40266534 tctgcgtgacttaagtcacgtagcgtgagttaactcacgcaaatttaacattagcgtgagttaac 40266598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 25759917 - 25759856
Alignment:
Q  215 gtgagttaacttatgtagggacattttggtcatttactttgggaatgagcagaaacgtttgg 276  Q
    ||||||||||| | | || ||||||||||||||||||||| ||||||||||||  |||||||    
T  25759917 gtgagttaactcacgcagagacattttggtcatttactttaggaatgagcagatccgtttgg 25759856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 25787842 - 25787903
Alignment:
Q  215 gtgagttaacttatgtagggacattttggtcatttactttgggaatgagcagaaacgtttgg 276  Q
    ||||||||||| ||| |||| ||||||||||||||| ||||| |||||||| || |||||||    
T  25787842 gtgagttaactcatgcaggggcattttggtcatttattttggaaatgagcataaccgtttgg 25787903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 33037385 - 33037430
Alignment:
Q  218 agttaacttatgtagggacattttggtcatttactttgggaatgag 263  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||||    
T  33037385 agttaacatgtgtaggggcattttggtcatttactttgggaatgag 33037430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 40266589 - 40266639
Alignment:
Q  215 gtgagttaacttatgtagggacattttggtcatttactttgggaatgagca 265  Q
    ||||||||||| | | | || ||||||||||||||||||||||||||||||    
T  40266589 gtgagttaactcacgcatgggcattttggtcatttactttgggaatgagca 40266639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 1145218 - 1145169
Alignment:
Q  215 gtgagttaacttatgtagggacattttggtcatttactttgggaatgagc 264  Q
    |||||||||| |  |||| | |||||||||||||||||||||||||||||    
T  1145218 gtgagttaacatgcgtagaggcattttggtcatttactttgggaatgagc 1145169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 17344802 - 17344843
Alignment:
Q  164 cgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    ||||| |||||||| ||||| |||||||||||||||||||||    
T  17344802 cgtgagttaactcacgcaaaattaacactagcgtgagttaac 17344843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 40266470 - 40266401
Alignment:
Q  193 agcgtgagttaacccatgcaatgtgagttaacttatgtagggacattttggtcatttactttgggaatga 262  Q
    ||||||||||||| |||||   | ||||||||| | | | || |||||||||||||||||||||||||||    
T  40266470 agcgtgagttaactcatgctgcgggagttaactcacgcatgggcattttggtcatttactttgggaatga 40266401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 7826128 - 7826188
Alignment:
Q  214 tgtgagttaacttatgtagggacattttggtcatttactttgggaatgagcagaaacgttt 274  Q
    ||||||||||| || ||||||  |||||||| | || ||||||||||||||| ||||||||    
T  7826128 tgtgagttaacatacgtaggggtattttggtaaatttctttgggaatgagcaaaaacgttt 7826188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 36580334 - 36580302
Alignment:
Q  162 aacgtgaattaactcatgcaaatttaacactag 194  Q
    ||||||| |||||||||||||||||||||||||    
T  36580334 aacgtgagttaactcatgcaaatttaacactag 36580302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 149102 - 149036
Alignment:
Q  144 gcgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaacccatg 210  Q
    |||||||||||||||  |||||||| |||||||| ||||||||||||||||||||||||||| ||||    
T  149102 gcgtgacttaagtcatgcaacgtgacttaactcacgcaaatttaacactagcgtgagttaactcatg 149036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 191 - 297
Target Start/End: Complemental strand, 26009470 - 26009368
Alignment:
Q  191 ctagcgtgagttaacccatgcaatgtgagttaacttatgtagggacattttggtcatttactttgggaatgagcagaaacgtttggttgggtaaagagca 290  Q
    |||||||||||| || || || | |||||||||| |  ||||| | ||||||||||||||||||||||||||||| || |||    ||||||||||||||    
T  26009470 ctagcgtgagttgactcacgctacgtgagttaacatgcgtaggaatattttggtcatttactttgggaatgagcaaaatcgt----ttgggtaaagagca 26009375  T
Q  291 gaattcg 297  Q
    |||||||    
T  26009374 gaattcg 26009368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 23345002 - 23345108
Alignment:
Q  170 ttaactcatgcaaatttaacactagcgtgagttaacccatgcaatgtgagttaacttatgtagggacattttggtcatttactttgggaatgagcagaaa 269  Q
    |||| ||| |||||||||||||||| |||||||||| ||||||  ||||||||||||| | | || || | ||  |||||| |||||||||||||| ||     
T  23345002 ttaattcacgcaaatttaacactagtgtgagttaactcatgcagcgtgagttaacttacgcatgggcaatatgaacatttattttgggaatgagcaaaat 23345101  T
Q  270 cgtttgg 276  Q
    |||||||    
T  23345102 cgtttgg 23345108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 28139384 - 28139445
Alignment:
Q  144 gcgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    |||||| |||| |||| || ||| | ||||||||||||||||||||||||||||||||||||    
T  28139384 gcgtgagttaactcacgcagcgtaacttaactcatgcaaatttaacactagcgtgagttaac 28139445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 28138814 - 28138759
Alignment:
Q  237 attttggtcatttactttgggaatgagcagaaacgtttggttgggtaaagagcagaattc 296  Q
    ||||||||||||||||||||||||||||| || | |    ||||||||||||||||||||    
T  28138814 attttggtcatttactttgggaatgagcaaaatcat----ttgggtaaagagcagaattc 28138759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 28139436 - 28139482
Alignment:
Q  215 gtgagttaacttatgtagggacattttggtcatttactttgggaatg 261  Q
    ||||||||||| | | |||| ||||||||||||||||||||||||||    
T  28139436 gtgagttaactcacgcaggggcattttggtcatttactttgggaatg 28139482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 16984432 - 16984391
Alignment:
Q  164 cgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    ||||| |||||||| ||| |||||||||||||||||||||||    
T  16984432 cgtgagttaactcacgcatatttaacactagcgtgagttaac 16984391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 18146251 - 18146190
Alignment:
Q  144 gcgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    ||||||||||| || | |||||||| ||||| ||  |||||||||||||||| |||||||||    
T  18146251 gcgtgacttaactctcgcaacgtgacttaacccacacaaatttaacactagcatgagttaac 18146190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 25428792 - 25428747
Alignment:
Q  231 agggacattttggtcatttactttgggaatgagcagaaacgtttgg 276  Q
    |||| ||||||||  ||||||||||||||||||||||| |||||||    
T  25428792 aggggcattttggatatttactttgggaatgagcagaaccgtttgg 25428747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 19931954 - 19931994
Alignment:
Q  165 gtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    |||| |||| ||||||||||||||||||||||||| |||||    
T  19931954 gtgagttaagtcatgcaaatttaacactagcgtgacttaac 19931994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 35105960 - 35106031
Alignment:
Q  188 acactagcgtgagttaacccatgcaatgtgagttaacttatgtagggacattttggtcatttactttgggaatgagc 264  Q
    |||||||||||||||||| || |||     |||||||| |||||| |||||||||||||||||||||||||||||||    
T  35105960 acactagcgtgagttaactcacgca-----agttaactcatgtagtgacattttggtcatttactttgggaatgagc 35106031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 2652469 - 2652368
Alignment:
Q  164 cgtgaattaactcatgcaaatttaacactagcgtgagttaacccatgcaatgtgagttaacttatgtagggacattttggtcatttactttgggaatgag 263  Q
    ||||| |||| ||||||||||||||||||||||||||||||| || |||  |  |||||||||| |||||| || | | | |||||||||||| || |||    
T  2652469 cgtgagttaagtcatgcaaatttaacactagcgtgagttaactcacgcagcgcaagttaacttacgtaggggcaatatagacatttactttggaaacgag 2652370  T
Q  264 ca 265  Q
    ||    
T  2652369 ca 2652368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 50663979 - 50663903
Alignment:
Q  188 acactagcgtgagttaacccatgcaatgtgagttaacttatgtagggacattttggtcatttactttgggaatgagc 264  Q
    |||||||| ||||||||| || || | |||||||||| |  |||||| ||||||||| |||||||||||||||||||    
T  50663979 acactagcttgagttaactcacgctacgtgagttaacatgcgtaggggcattttggttatttactttgggaatgagc 50663903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 8150245 - 8150185
Alignment:
Q  216 tgagttaacttatgtagggacattttggtcatttactttgggaatgagcagaaacgtttgg 276  Q
    ||||||||| || ||||||  |||||||||| || ||||||||||||||| ||||||||||    
T  8150245 tgagttaacatacgtaggggtattttggtcagtttctttgggaatgagcaaaaacgtttgg 8150185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 26998262 - 26998297
Alignment:
Q  170 ttaactcatgcaaatttaacactagcgtgagttaac 205  Q
    |||||||||| |||||||||||||||||||||||||    
T  26998262 ttaactcatgtaaatttaacactagcgtgagttaac 26998297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 40517051 - 40517001
Alignment:
Q  215 gtgagttaacttatgtagggacattttggtcatttactttgggaatgagca 265  Q
    |||| |||||||| |||| ||||||||| ||||||||||| ||||||||||    
T  40517051 gtgacttaacttacgtagagacattttgatcatttactttaggaatgagca 40517001  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 3540183 - 3540224
Alignment:
Q  164 cgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    ||||| |||| ||||||||||||||||||||||||| |||||    
T  3540183 cgtgagttaagtcatgcaaatttaacactagcgtgacttaac 3540224  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 9539010 - 9539129
Alignment:
Q  146 gtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaacccatgcaatgtgagttaacttatgtagggacattttggtc 245  Q
    ||||||||| |||| | |||||| | |  ||||||||||||||||||||||||  ||||| ||  |||||  |||||||||||| |||| || | ||  |    
T  9539010 gtgacttaactcacgctacgtgagtcacgtcatgcaaatttaacactagcgtgttttaactcacacaatgcaagttaacttatgcaggggcaatatgaac 9539109  T
Q  246 atttactttgggaatgagca 265  Q
    ||||||||||||||||||||    
T  9539110 atttactttgggaatgagca 9539129  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 12965126 - 12965049
Alignment:
Q  215 gtgagttaacttatgtagggacattttggtcatttactttgggaatgagcagaaacgtttggttgggtaaagagcagaattc 296  Q
    ||||||||||| | |||||  ||||||| ||||||||||||  |||||||||||||||    ||||||||||||||||||||    
T  12965126 gtgagttaactcacgtaggagcattttgatcatttactttgaaaatgagcagaaacgt----ttgggtaaagagcagaattc 12965049  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 12965238 - 12965117
Alignment:
Q  90 tgaaacaaaatcaaacgtgagttaacacacgttggatttt--agtgtgttttttctgcgtgacttaagt-----cacacaacgtgaattaactcatgcaa 182  Q
    |||||||||||||  ||||||||||| || | ||| ||||  ||||||||||| |||||||||||||||     ||| || ||||| |||||||  | ||    
T  12965238 tgaaacaaaatcag-cgtgagttaactcatgctgggtttttgagtgtgtttttcctgcgtgacttaagttatctcacgcagcgtgagttaactctcgtaa 12965140  T
Q  183 atttaacactagcgtgagttaac 205  Q
    |||||||| ||||||||||||||    
T  12965139 atttaacattagcgtgagttaac 12965117  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 28360128 - 28360093
Alignment:
Q  170 ttaactcatgcaaatttaacactagcgtgagttaac 205  Q
    |||||||| |||||||||||||||||||||||||||    
T  28360128 ttaactcacgcaaatttaacactagcgtgagttaac 28360093  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 41101275 - 41101215
Alignment:
Q  145 cgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    ||||| |||| |||| |||||||| |||| ||| | | |||||||||||||||||||||||    
T  41101275 cgtgagttaactcacgcaacgtgagttaagtcacggagatttaacactagcgtgagttaac 41101215  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 5603128 - 5603178
Alignment:
Q  162 aacgtgaattaactcatgcaaatttaacactagcgtgagttaacccatgca 212  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| ||||||    
T  5603128 aacgtgagttaactcacgcaaatttaacactagcgtgagttaactcatgca 5603178  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 10884458 - 10884499
Alignment:
Q  164 cgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    ||||| |||||||| |||||||||||||||||||||||||||    
T  10884458 cgtgagttaactcacgcaaatttaacactagcgtgagttaac 10884499  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 42883723 - 42883764
Alignment:
Q  164 cgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  42883723 cgtgagttaactcatgcaaatttaacacttgcgtgagttaac 42883764  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 5603047 - 5602971
Alignment:
Q  189 cactagcgtgagttaacccatgcaatgtgagttaacttatgtagggacattttggtcatttactttgggaatgagca 265  Q
    ||||||||||||||||| ||| |   | ||||||||| |   |||| ||||||||||||||||||||||||||||||    
T  5603047 cactagcgtgagttaactcatactgcgggagttaactcacacaggggcattttggtcatttactttgggaatgagca 5602971  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 9862863 - 9862942
Alignment:
Q  185 ttaacactagcgtgagttaacccatgcaatgtgagttaacttatgtagggacattttggtcatttactttgggaatgagc 264  Q
    ||||||||||||||||||||| ||   || |||| |||| ||| ||| ||||||||| | |||||| |||||||||||||    
T  9862863 ttaacactagcgtgagttaactcacataacgtgacttaagttacgtaaggacattttagacatttattttgggaatgagc 9862942  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 4329008 - 4329081
Alignment:
Q  105 cgtgagttaacacacgttggattttagtgtgttttttctgcgtgacttaagtcacacaacgtgaattaactcat 178  Q
    ||||||||||| |||| ||| ||||||||||| |||||| ||| | ||||||||| || ||||| |||| ||||    
T  4329008 cgtgagttaactcacgctgggttttagtgtgtgttttcttcgtaatttaagtcacgcagcgtgagttaattcat 4329081  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 13280794 - 13280754
Alignment:
Q  165 gtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    ||||||||| ||| ||| |||||||||||||||||||||||    
T  13280794 gtgaattaagtcacgcatatttaacactagcgtgagttaac 13280754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 807124 - 807185
Alignment:
Q  136 ttttttctgcgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgt 197  Q
    |||||| ||||||||||||||||| ||  |||| |||||||| |||||||||||||||||||    
T  807124 ttttttttgcgtgacttaagtcacgcagtgtgagttaactcacgcaaatttaacactagcgt 807185  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 14830465 - 14830420
Alignment:
Q  219 gttaacttatgtagggacattttggtcatttactttgggaatgagc 264  Q
    |||||| | |||||||||||||||| ||||||||||||||||||||    
T  14830465 gttaacatgtgtagggacattttggacatttactttgggaatgagc 14830420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 31522539 - 31522585
Alignment:
Q  218 agttaacttatgtagggacattttggtcatttactttgggaatgagc 264  Q
    |||||||||  |||||| ||||| |||||||||||||||||||||||    
T  31522539 agttaacttgcgtaggggcatttcggtcatttactttgggaatgagc 31522585  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 17436546 - 17436591
Alignment:
Q  219 gttaacttatgtagggacattttggtcatttactttgggaatgagc 264  Q
    |||||| | ||||||||||||| |||||||||||||||||| ||||    
T  17436546 gttaacatgtgtagggacatttcggtcatttactttgggaacgagc 17436591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 14153409 - 14153381
Alignment:
Q  237 attttggtcatttactttgggaatgagca 265  Q
    |||||||||||||||||||||||||||||    
T  14153409 attttggtcatttactttgggaatgagca 14153381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 3588443 - 3588370
Alignment:
Q  189 cactagcgtgagttaacccatgcaatgtgagttaacttatgtagggacattttggtcatttactttgggaatga 262  Q
    |||||||| |||||||| ||||| | | ||||||||| || |||||  ||||||||||||||||||| ||||||    
T  3588443 cactagcgggagttaactcatgctacgggagttaactcatatagggttattttggtcatttactttgagaatga 3588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 3588546 - 3588596
Alignment:
Q  215 gtgagttaacttatgtagggacattttggtcatttactttgggaatgagca 265  Q
    ||||||||||| | | |||| ||||||||||||||| ||||||||||||||    
T  3588546 gtgagttaactcacgcaggggcattttggtcatttaatttgggaatgagca 3588596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 1349124 - 1349063
Alignment:
Q  215 gtgagttaacttatgtagggacattttggtcatttactttgggaatgagcagaaacgtttgg 276  Q
    ||||||||||| | | |||||||||||||||||||   ||||||||||||| |||| |||||    
T  1349124 gtgagttaactcacgcagggacattttggtcatttcacttgggaatgagcaaaaacttttgg 1349063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 3588493 - 3588555
Alignment:
Q  141 tctgcgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    |||||||||||| | ||||  | ||||| ||||||||  ||||||||||||||||||||||||||    
T  3588493 tctgcgtgacttgactcacgtagcgtgagttaactca--caaatttaacactagcgtgagttaac 3588555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 32035877 - 32035816
Alignment:
Q  144 gcgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    |||||| |||| |||| || |||| ||||| |||| ||| ||||||||||||||||||||||    
T  32035877 gcgtgagttaactcacgcagcgtggattaagtcatacaattttaacactagcgtgagttaac 32035816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 15909021 - 15908953
Alignment:
Q  144 gcgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaacccatgca 212  Q
    ||||||||||| ||||||||||||  ||||||||   ||| |||| |||||| ||||||||| ||||||    
T  15909021 gcgtgacttaactcacacaacgtgtgttaactcacttaaaattaatactagcatgagttaactcatgca 15908953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 24974161 - 24974197
Alignment:
Q  229 gtagggacattttggtcatttactttgggaatgagca 265  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  24974161 gtaggggcatttcggtcatttactttgggaatgagca 24974197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 37999472 - 37999536
Alignment:
Q  141 tctgcgtgacttaagtcacacaacgtgaattaactcatgcaaatttaacactagcgtgagttaac 205  Q
    ||||| ||| |||| |||| || |||||||||| ||| ||  |||||||||||||||||||||||    
T  37999472 tctgcatgagttaactcacgcagcgtgaattaagtcacgctgatttaacactagcgtgagttaac 37999536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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