View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19548_low_5 (Length: 363)
Name: NF19548_low_5
Description: NF19548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19548_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 47601372 - 47601047
Alignment:
| Q |
19 |
cactttgtggttcacattcccgatggtttgccacttgaagctactgctcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47601372 |
cactttgtggttcacattcccgatggtttgccacttgaagctactgctcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggac |
47601273 |
T |
|
| Q |
119 |
tcgacaaacctggtatgcatataggtgttgttggtcttggtggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaat |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47601272 |
tcgataaacctggtatgcatataggtgttgttggtcttggtggacttggtcacatggctgttaagtttgctaaagcttttggggctaatgtgactgtaat |
47601173 |
T |
|
| Q |
219 |
tagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggagctgactcatttttgataagtcgtgaccaagataagatgcaagtataaatacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47601172 |
tagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggagctgactcatttttgataagtcgtgaccaagataagatgcaagtataaatacaa |
47601073 |
T |
|
| Q |
319 |
tagttcaatattctaatattcttaaa |
344 |
Q |
| |
|
||||| || ||||||||||||||||| |
|
|
| T |
47601072 |
tagttaaacattctaatattcttaaa |
47601047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 13393604 - 13393902
Alignment:
| Q |
19 |
cactttgtggttcacattcccgatggtttgccacttgaagctactgctcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggac |
118 |
Q |
| |
|
|||||| | ||||||||||| ||||| || ||||||||| || |||||||||| |||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
13393604 |
cactttatagttcacattcctgatggcttaccacttgaatctgctgctcctctcctttgtgccggtattactgtgtatagtcctcttcgatattttggac |
13393703 |
T |
|
| Q |
119 |
tcgacaaacctggtatgcatataggtgttgttggtcttggtggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaat |
218 |
Q |
| |
|
||||||| ||||||||| |||||||| |||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||| |||||||| || ||||| |
|
|
| T |
13393704 |
tcgacaagcctggtatgaatataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaat |
13393803 |
T |
|
| Q |
219 |
tagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggagctgactcatttttgataagtcgtgaccaagataagatgcaagtataaataca |
317 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| |||| | |||||||||| |||||| | ||||||| |||||||||||| ||||| ||| ||||||| |
|
|
| T |
13393804 |
tagtacatcacccaacaaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaataca |
13393902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 13385377 - 13385691
Alignment:
| Q |
20 |
actttgtggttcacattcccgatggtttgccacttgaagctactgctcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggact |
119 |
Q |
| |
|
|||| |||||||||||||| ||||| || |||||||||||| |||| ||||| |||||||| || ||||| ||||| ||||||||| |||| |||||||| |
|
|
| T |
13385377 |
acttcgtggttcacattcctgatggattaccacttgaagctgctgcacctctcctttgtgctgggatcactgtgtacagtcctcttagatactttggact |
13385476 |
T |
|
| Q |
120 |
cgacaaacctggtatgcatataggtgttgttggtcttggtggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaatt |
219 |
Q |
| |
|
||||||||||||| | ||| | |||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
13385477 |
cgacaaacctggtcttcatgtcggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaatt |
13385576 |
T |
|
| Q |
220 |
agtacatcacctaacaaagaaaaagaagcaagagaatgcttaggagctgactcatttttgataagtcgtgaccaagataagatgcaagta-taaatacaa |
318 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||| |||| |||||||||||| |||||| |||||||||||||||||||||| ||||| ||| ||| | || |
|
|
| T |
13385577 |
agtacatctgctagcaaagaaaaggaagcaaaagaacacttaggagctgattcatttctgataagtcgtgaccaagataaaatgcaggtacaaaaaaaaa |
13385676 |
T |
|
| Q |
319 |
tagttcaatattcta |
333 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13385677 |
tagttcaatattcta |
13385691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 13389198 - 13389511
Alignment:
| Q |
20 |
actttgtggttcacattcccgatggtttgccacttgaagctactgctcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggact |
119 |
Q |
| |
|
|||| |||||||||||||| ||||| || |||||||||||| |||| ||||| |||||||| || ||||| ||||| ||||||||| |||||| |||||| |
|
|
| T |
13389198 |
acttcgtggttcacattcctgatggattaccacttgaagctgctgcacctctcctttgtgctgggatcactgtgtacagtcctcttagatattatggact |
13389297 |
T |
|
| Q |
120 |
cgacaaacctggtatgcatataggtgttgttggtcttggtggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaatt |
219 |
Q |
| |
|
||| ||||||||| | | |||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||| | ||| || || ||| |
|
|
| T |
13389298 |
cgataaacctggtcttcgtataggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgatt |
13389397 |
T |
|
| Q |
220 |
agtacatcacctaacaaagaaaaagaagcaagagaatgcttaggagctgactcatttttgataagtcgtgaccaagataagatgcaagtataaatacaat |
319 |
Q |
| |
|
||||||||||| |||||||| |||||||||| |||| ||||||||| || |||||| ||||||||||||||||||| || ||||| ||| ||| | ||| |
|
|
| T |
13389398 |
agtacatcacccaacaaagagaaagaagcaatagaacacttaggagccgattcatttctgataagtcgtgaccaagagaaaatgcaggtacaaaaaaaat |
13389497 |
T |
|
| Q |
320 |
agttcaatattcta |
333 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
13389498 |
tgttcaattttcta |
13389511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 13419550 - 13419297
Alignment:
| Q |
19 |
cactttgtggttcacattcccgatggtttgccacttgaagctactgctcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggac |
118 |
Q |
| |
|
||||||||| ||| |||||| ||| | || || ||||| ||| | | |||||||||||| || || |||||||||||||||||||||||| |||||| || |
|
|
| T |
13419550 |
cactttgtgattcgcattcctgatagcttacctcttgatgctgccggtcctcttctttgcgctggaatcacagtgtatagtcctcttcgacattttgaac |
13419451 |
T |
|
| Q |
119 |
tcgacaaacctggtatgcatataggtgttgttggtcttggtggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaat |
218 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||| || |||||||| || ||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
13419450 |
tcgacaagcctggtatgaatataggtgttgttggtcttggtggacttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaat |
13419351 |
T |
|
| Q |
219 |
tagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggagctgactc |
272 |
Q |
| |
|
||||||||| ||| |||||||||| ||||||| |||| ||| ||||||||||| |
|
|
| T |
13419350 |
tagtacatcgcctcacaaagaaaaggaagcaatagaacacttgggagctgactc |
13419297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 66 - 292
Target Start/End: Complemental strand, 13413158 - 13412932
Alignment:
| Q |
66 |
tcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgacaaacctggtatgcatataggtgttgttggtcttggtggactt |
165 |
Q |
| |
|
|||||| |||||||| ||| |||| || |||||||||||||||| |||||||||||| || |||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
13413158 |
tcctctcctttgtgctggtgtcaccgtatatagtcctcttcgattttttggactcgataagcctggtttacatataggtgttgttggtcttggtggactt |
13413059 |
T |
|
| Q |
166 |
ggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggag |
265 |
Q |
| |
|
|| || |||||||| || ||||| |||||||| ||||||||||| || |||||||||||||| |||||||||||||| ||||||| |||| |||||||| |
|
|
| T |
13413058 |
ggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaagaaaaggaagcaatagaacacttaggag |
13412959 |
T |
|
| Q |
266 |
ctgactcatttttgataagtcgtgacc |
292 |
Q |
| |
|
|||| |||||| |||||||| |||||| |
|
|
| T |
13412958 |
ctgattcatttctgataagtagtgacc |
13412932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 66 - 272
Target Start/End: Complemental strand, 13447054 - 13446848
Alignment:
| Q |
66 |
tcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgacaaacctggtatgcatataggtgttgttggtcttggtggactt |
165 |
Q |
| |
|
|||||||||||| || || ||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
13447054 |
tcctcttctttgcgctggagtcacagtgtatagtcctcttcgacattttggactcgacaagcctggtatgaatataggagttgttggtcttggtggactt |
13446955 |
T |
|
| Q |
166 |
ggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggag |
265 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||||| ||||| ||||||||||| || ||||| || ||||| ||||||| |||| |||||||| |
|
|
| T |
13446954 |
ggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgaccgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggag |
13446855 |
T |
|
| Q |
266 |
ctgactc |
272 |
Q |
| |
|
| ||||| |
|
|
| T |
13446854 |
cagactc |
13446848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 62 - 290
Target Start/End: Complemental strand, 13454011 - 13453783
Alignment:
| Q |
62 |
ctgctcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgacaaacctggtatgcatataggtgttgttggtcttggtgg |
161 |
Q |
| |
|
|||||||||| |||||||| || || || || ||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
13454011 |
ctgctcctctcctttgtgctgggataaccgtatatagtcctcttcgacattttggactcgacaagcctgatatgaatataggtgttgttggtcttggtgg |
13453912 |
T |
|
| Q |
162 |
acttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgctta |
261 |
Q |
| |
|
|||||| || ||||| || || || || |||||||| |||||||||||||| |||||||||||||||||||| || ||||| |||||| |||| |||| |
|
|
| T |
13453911 |
acttggccatatggccgtgaaattcgccaaagctttcggtgctaatgtgaccgtaattagtacatcacctaaaaaggaaaaggaagcattagaacactta |
13453812 |
T |
|
| Q |
262 |
ggagctgactcatttttgataagtcgtga |
290 |
Q |
| |
|
|||| ||||||||| | ||||| ||||| |
|
|
| T |
13453811 |
cgagcggactcatttctaataagccgtga |
13453783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 66 - 272
Target Start/End: Complemental strand, 13426394 - 13426188
Alignment:
| Q |
66 |
tcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgacaaacctggtatgcatataggtgttgttggtcttggtggactt |
165 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
13426394 |
tcctcttctttgcgctggagtcacagtgtatagtcctcttcgtcattttcaactcgacaagcctggtatgaatataggcgttgttggtcttggtggactt |
13426295 |
T |
|
| Q |
166 |
ggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggag |
265 |
Q |
| |
|
||||| |||||||| || || || |||||||||||||||||||| || |||||||||||||| |||| ||||||||| ||||| | |||| ||||||| |
|
|
| T |
13426294 |
ggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggag |
13426195 |
T |
|
| Q |
266 |
ctgactc |
272 |
Q |
| |
|
||||||| |
|
|
| T |
13426194 |
ctgactc |
13426188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 50 - 275
Target Start/End: Complemental strand, 13379057 - 13378832
Alignment:
| Q |
50 |
cacttgaagctactgctcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgacaaacctggtatgcatataggtgttgt |
149 |
Q |
| |
|
||||||| ||| | |||||||| |||||||| || |||||||||||||| || | | |||||||| | ||||||||||| ||||||||||||| || |
|
|
| T |
13379057 |
cacttgatgctgccgctcctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttggatttgacaaacctggactgcatataggtgtggt |
13378958 |
T |
|
| Q |
150 |
tggtcttggtggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagca |
249 |
Q |
| |
|
||||||||||||| | ||||| |||||||| ||||| || ||||| ||||||| ||| || ||||| | ||||| || ||||||||| | || ||||| |
|
|
| T |
13378957 |
tggtcttggtggattaggtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagcc |
13378858 |
T |
|
| Q |
250 |
agagaatgcttaggagctgactcatt |
275 |
Q |
| |
|
| ||| ||||||||||||||||||| |
|
|
| T |
13378857 |
attgaacgcttaggagctgactcatt |
13378832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 49 - 276
Target Start/End: Complemental strand, 13373262 - 13373035
Alignment:
| Q |
49 |
ccacttgaagctactgctcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgacaaacctggtatgcatataggtgttg |
148 |
Q |
| |
|
|||||||| || ||||||||||||||||||| || |||||||| ||||| ||| | |||||||||||| |||| |||||| | ||| | ||||| | |
|
|
| T |
13373262 |
ccacttgatgccgctgctcctcttctttgtgcggggatcacagtatatagccctttgaaatattttggacttaacaagcctggtttacatgtgggtgtgg |
13373163 |
T |
|
| Q |
149 |
ttggtcttggtggacttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagc |
248 |
Q |
| |
|
|||||||||||||| | ||||| |||||||| || ||| | |||||||||||||||||||| || || || || || || ||||||||| | || ||||| |
|
|
| T |
13373162 |
ttggtcttggtggattaggtcatatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaacaaaaagaaggaagc |
13373063 |
T |
|
| Q |
249 |
aagagaatgcttaggagctgactcattt |
276 |
Q |
| |
|
| ||| ||||||||||||||||||| |
|
|
| T |
13373062 |
cattgaacacttaggagctgactcattt |
13373035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 64 - 237
Target Start/End: Original strand, 28430625 - 28430798
Alignment:
| Q |
64 |
gctcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgacaaacctggtatgcatataggtgttgttggtcttggtggac |
163 |
Q |
| |
|
|||||||| || || ||||| ||||| |||||||| ||| | |||||||||||| || |||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
28430625 |
gctcctctcctctgcgccgggatcacggtgtatagccctttgaaatattttggacttgataaacctaacttgcaattaggtgtggttggtcttggtggac |
28430724 |
T |
|
| Q |
164 |
ttggtcacatggctgttaagtttgctaaagcttttggtgctaatgtgactgtaattagtacatcacctaacaaa |
237 |
Q |
| |
|
||||||| |||||||| || ||||| ||||||||||||||||| || || || ||||| || || ||||||||| |
|
|
| T |
28430725 |
ttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaa |
28430798 |
T |
|
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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 8354109 - 8354168
Alignment:
| Q |
142 |
ggtgttgttggtcttggtggacttggtcacatggctgttaagtttgctaaagcttttggt |
201 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||||| || |||| |||||| |||||| |
|
|
| T |
8354109 |
ggtgttgttggtttgggaggacttggtcacatggctgtaaaatttggtaaagcatttggt |
8354168 |
T |
|
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