View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19549_high_11 (Length: 293)

Name: NF19549_high_11
Description: NF19549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19549_high_11
NF19549_high_11
[»] chr6 (8 HSPs)
chr6 (15-277)||(13046712-13046977)
chr6 (15-274)||(13052933-13053195)
chr6 (15-277)||(13062002-13062267)
chr6 (18-100)||(6477147-6477229)
chr6 (26-100)||(6480218-6480292)
chr6 (26-100)||(6491639-6491713)
chr6 (20-56)||(6482234-6482270)
chr6 (20-56)||(6493655-6493691)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 13046712 - 13046977
Alignment:
Q  15 ataattcttaattttgttcttaaactcttatctcatgataatactgcttttgttggccgaattgcccagcacgttgttgagttaaaatgttaannnnnnn 114  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||           
T  13046712 ataattcttaattttgttcttaaactcttatctcgtgataatgctgcttttgttggccgaattgctcagcacgttgttgagttaaaatgttaattttttt 13046811  T
Q  115 --ggttaatagcccctattgctatgaagtaagttgtgagattttagtaa-ttttaatctatatctatattgtgaaatttcagcttgtatcgctttgattg 211  Q
      ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13046812 ttggttattagcccctattgctatgaagtaagttgtgagattttagtaacttttaatctatatctatattgtgaaatttcagcttgtatcgcttggattg 13046911  T
Q  212 ttttgttttgtttcagtatacatgcatttgaatatatacttgttaagtaaaattggaacatgaaat 277  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  13046912 ttttattttgtttcagtatacatacatttgaatatataattgttaagttaaattggaacatgaaat 13046977  T

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Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 13052933 - 13053195
Alignment:
Q  15 ataattcttaattttgttcttaaactcttatctcatgataatactgcttttgttggccgaattgcccagcacgttgttgagttaaaatgttaannnnnnn 114  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||           
T  13052933 ataattcttaattttgttcttaaactcttatctcatgataatgctgcttttgttggtcgaattgctcagcacgttgttgagttaaaatgttaattttttt 13053032  T
Q  115 -ggttaata-gcccctattgctatgaagtaagttgtgagattttagtaa-ttttaatctatatctatattgtgaaatttcagcttgtatcgctttgattg 211  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  13053033 tggttaataagcccctattgctatgaagtaagttgtgagattttagtaacttttaatctatatctatattgtgaaatttcagtttgtatcgcttggattg 13053132  T
Q  212 ttttgttttgtttcagtatacatgcatttgaatatatacttgttaagtaaaattggaacatga 274  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  13053133 ttttgttttgtttcagtatacatacatttgaatatataattgttaagttaaattggaacatga 13053195  T

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Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 13062002 - 13062267
Alignment:
Q  15 ataattcttaattttgttcttaaactcttatctcatgataatactgcttttgttggccgaattgcccagcacgttgttgagttaaaatgttaannnnnnn 114  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||           
T  13062002 ataattctttattttgttcttaaactcttatctcatgataatgctgcttttgttggtcgaattgctcagcactttgttgagttaaaatgttaattttttt 13062101  T
Q  115 --ggttaatagcccctattgctatgaagtaagttgtgagattttagtaa-ttttaatctatatctatattgtgaaatttcagcttgtatcgctttgattg 211  Q
      ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13062102 ttggttaatagcccctattgctatgaagtaagttgtgagattttagtaacttttaatctatatctatattgtgaaatttcagcttgtatcgcttggattg 13062201  T
Q  212 ttttgttttgtttcagtatacatgcatttgaatatatacttgttaagtaaaattggaacatgaaat 277  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||||    
T  13062202 ttttgttttgtttcagtatacatacatttgaatatataattgttaagttaaattggatcatgaaat 13062267  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 6477147 - 6477229
Alignment:
Q  18 attcttaattttgttcttaaactcttatctcatgataatactgcttttgttggccgaattgcccagcacgttgttgagttaaa 100  Q
    ||||||| |||||||||||||||||||||||  |||||| ||| ||||||  |  ||||||| ||| | ||||||||||||||    
T  6477147 attcttatttttgttcttaaactcttatctctggataatgctgattttgtctgatgaattgctcagtatgttgttgagttaaa 6477229  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 6480218 - 6480292
Alignment:
Q  26 ttttgttcttaaactcttatctcatgataatactgcttttgttggccgaattgcccagcacgttgttgagttaaa 100  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||  |  ||||||| ||| | ||||||||||||||    
T  6480218 ttttgttcttaaactcttatctcttgataatgctgattttgtctgatgaattgctcagtatgttgttgagttaaa 6480292  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 6491639 - 6491713
Alignment:
Q  26 ttttgttcttaaactcttatctcatgataatactgcttttgttggccgaattgcccagcacgttgttgagttaaa 100  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||  |  ||||||| ||| | ||||||||||||||    
T  6491639 ttttgttcttaaactcttatctcttgataatgctgattttgtctgatgaattgctcagtatgttgttgagttaaa 6491713  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 6482234 - 6482270
Alignment:
Q  20 tcttaattttgttcttaaactcttatctcatgataat 56  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  6482234 tcttatttttgttcttaaactcttatctcttgataat 6482270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 6493655 - 6493691
Alignment:
Q  20 tcttaattttgttcttaaactcttatctcatgataat 56  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  6493655 tcttatttttgttcttaaactcttatctcttgataat 6493691  T

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