View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19549_high_2 (Length: 582)
Name: NF19549_high_2
Description: NF19549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19549_high_2 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 15 - 582
Target Start/End: Original strand, 34437088 - 34437642
Alignment:
| Q |
15 |
cataggccaaacctctccatttgtctttgtcagtttgcttgctttcatcaatctcagcagcaacaattttgaatcttccagatgaaacctttgtgtttgg |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437088 |
cataggccaaacctctccatctgtctttgtcagtttgcttgctttcattaatctcagcagcaacaattttgaatcttccagatgaaacctttgtgtttgg |
34437187 |
T |
|
| Q |
115 |
taacctcgaggtaactttctttaagctggttccaaagaatgatgaatttggaactgaagctactgctccagagctattcaaactcaactgcaatatcaca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437188 |
taacctcgaggtaactttctttaagctggttccaaagaatgatgaacttggaactgaagctactgctccagagctattcaaactcaactgcaatatcaca |
34437287 |
T |
|
| Q |
215 |
gtattatcctatgagtcacatcggacatgacactaatacgtagacattggtaatcatttaagaaaattaaattattgaatgtaagtcaacacatgtgtcg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437288 |
gtattatcctatgagtcacatcggacatgacactaatacgtagacattggtaatcatttaagaaaattaaattattgaatgtaagtcaacacatgtgtcg |
34437387 |
T |
|
| Q |
315 |
gtagcatgttggtgtatgagacaaatacatgttagacactagacacgactttaatctaaagtatcagttctacttaggaattagccactcttttgtacta |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437388 |
gtagcatgttggtgtatgagacaaatacatgttagacactagacac-------------agtatcagttctacttaggaattagccactcttttgtacta |
34437474 |
T |
|
| Q |
415 |
tttatactatctgaaagtttactcaaatgctatagacatgcaatccagaccatcatactatatttataaatcaaagtaccagggattgtgccgctagatt |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34437475 |
tttatactatctgaaagtttactcaaatgctatagacatgcaatccagaccatcatactatatttataaatcaaagtaccagggattgttccgctagatt |
34437574 |
T |
|
| Q |
515 |
agtcggtccttgcccgataccaattaataagtcaactgagatgtacgatcttaataggacggtctaga |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34437575 |
agtcggtccttgcccgataccaattaataagtcaactgagatgtacgatcttaataggtcggtctaga |
34437642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University