View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19549_high_4 (Length: 488)
Name: NF19549_high_4
Description: NF19549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19549_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 24 - 473
Target Start/End: Complemental strand, 43076985 - 43076532
Alignment:
| Q |
24 |
aaggccataaaacagaatgtgacaaaattgtaatggaataataacaaaacnnnnnnn----gtataatagcacaagtacttacgtgtaaacccctgcatg |
119 |
Q |
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| T |
43076985 |
aaggccataaaacagaatgtgacaaaattgtaatggaataataacaaaaacaaaaaaaaaagtataatagcacaagtacttacgtgtaaacccctgcatg |
43076886 |
T |
|
| Q |
120 |
aaccttaatgacaactctcactaaattaatgaagggaagggaatcaatggctgcttgaattgatgaaaatcctcctttacttgaatgtttataaacgttc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076885 |
aaccttaatgacaactctcactaaattaatgaagggaagggaatcaatggctgcttgaattgatgaaaatcctcctttacttgaatgtttataaacgttc |
43076786 |
T |
|
| Q |
220 |
aaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaatttcacccatttcatgaattgttgttctgatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076785 |
aaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaatttcacccatttcatgaattgttgttctgatt |
43076686 |
T |
|
| Q |
320 |
cttggactttggtcatattggcagacattccaaatccagtagaaggttttggtcgaagtccctttgtatgacattgtgttacaatgggattttgtagaac |
419 |
Q |
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| T |
43076685 |
cttggactttggtcatattggcagacattccaaatccagtagaaggttttggtcgaagtccctttgtatgacattgtgttacaatgggattttgtagaac |
43076586 |
T |
|
| Q |
420 |
aagaagaagtaataaaacatagaaaatgaaattcatgtttgaagtattattctt |
473 |
Q |
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| T |
43076585 |
aagaagaagtaataaaacatagaaaatgaaattcatgtttgaagtattattctt |
43076532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 96 - 316
Target Start/End: Original strand, 33966669 - 33966889
Alignment:
| Q |
96 |
tacttacgtgtaaacccctgcatgaaccttaatgacaactctcactaaattaatgaagggaagggaatcaatggctgcttgaattg-atgaaaatcctcc |
194 |
Q |
| |
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|||| |||||||||| |||||||||||||| ||||||||||| || | ||| ||| | ||||| ||||||||||| |||||||| || |||||| ||| |
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| T |
33966669 |
tactcacgtgtaaactcctgcatgaaccttgatgacaactctaacaagattgatggaaggaagagaatcaatggcattttgaattgtatcaaaatc-tcc |
33966767 |
T |
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| Q |
195 |
tttacttgaatgtttataaacgttcaaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaatttcacc |
294 |
Q |
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| | || |||| ||||| |||||||||||||| ||| ||||||||||| || | | | ||||| |||||||||||||||||||| ||||| |
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| T |
33966768 |
aaaagaaggattcttatcaacgtgcaaagtataagaagcaaatagcttattttttgcagccttgtaaacagtgtgtttgagaccaccaacaaaactcacc |
33966867 |
T |
|
| Q |
295 |
catttcatgaattgttgttctg |
316 |
Q |
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|||||||||||||||||||||| |
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| T |
33966868 |
catttcatgaattgttgttctg |
33966889 |
T |
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Back To:
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