View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19549_low_1 (Length: 763)

Name: NF19549_low_1
Description: NF19549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19549_low_1
NF19549_low_1
[»] chr5 (3 HSPs)
chr5 (15-598)||(26578826-26579424)
chr5 (678-750)||(26578672-26578746)
chr5 (194-464)||(34918961-34919231)
[»] chr4 (6 HSPs)
chr4 (172-467)||(36296478-36296773)
chr4 (172-467)||(35072705-35073000)
chr4 (321-461)||(35097688-35097828)
chr4 (375-467)||(35106860-35106952)
chr4 (375-434)||(36936005-36936064)
chr4 (375-444)||(36940703-36940772)
[»] chr6 (2 HSPs)
chr6 (172-467)||(24014204-24014499)
chr6 (375-461)||(24040964-24041050)
[»] chr1 (1 HSPs)
chr1 (321-464)||(3123076-3123219)


Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 15 - 598
Target Start/End: Complemental strand, 26579424 - 26578826
Alignment:
Q  15 actataagcacacatttatttttattcaatacatttcattaaagggtgattactcatctccaaccttattgttcaaaatatacccgggagaatccatctt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||       |||||||||||||||    
T  26579424 actataagcacacatttatttttattcaatacatttcattaaagggtgattattcatctccaaccttattgttcagaa-------gggagaatccatctt 26579332  T
Q  115 atgtgtcacatcgattcgtgga----------------------ttttgaagacttagcctgtaatctgaacaggtttcacatcaggcttcttaacctcc 192  Q
    ||||||||||| ||||||||||                      ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26579331 atgtgtcacattgattcgtggacggagatttatcaccgttgcgattttgaagacttagcctgtaatctgaacaggcttcacatcaggcttcttaacctcc 26579232  T
Q  193 accttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggcaacctaaaccgccggagaaaacttc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26579231 accttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggcaacctaaaccgccggagaaaacttc 26579132  T
Q  293 cctggcttcgttcaacgcgatgccaggtatcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaacatgatcatcttcaatctcaac 392  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  26579131 cctggcttcgttcaacgcgatgccaggtatcattcttgtcttccttctcaattttcctctctccacttatcttcaaaacacgatcctcttcaatctcaac 26579032  T
Q  393 cttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttccagtcaatgcgcgcattagcgaacgatgatgtt 492  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26579031 cttcacttcctccttcttcacgccgggaagatcggctttgaagatgtgtgcttccggtgtttccttccagtcagtgcgcgcattagcgaacgatgatgtt 26578932  T
Q  493 tcgttggtggtagggaagttttggaatggatcccataagtctagagagaatgggtcgaagatgttgcttcttcgtccggttccgaacacacttggaatga 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26578931 tcgttggtggtagggaagttttggaatggatcccataagtctagagagaatgggtcgaagatgttgcttcttcgtccggttccgaagacacttggaatga 26578832  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 678 - 750
Target Start/End: Complemental strand, 26578746 - 26578672
Alignment:
Q  678 atgaggaaatg--gggtgtgtgtgagagctttatatagaaggcgatgggagtgatttggtcactatagatgatgt 750  Q
    |||||||||||  | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26578746 atgaggaaatggtgtgtgtgtgtgagagctttatatagagggcgatgggagtgatttggtcactatagatgatgt 26578672  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 194 - 464
Target Start/End: Complemental strand, 34919231 - 34918961
Alignment:
Q  194 ccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggcaacctaaaccgccggagaaaacttcc 293  Q
    ||||||||||| |||||||||| || ||||||||||| |||||||| |||| |||||  ||| ||||||| ||||||||||||| ||  |  ||||||||    
T  34919231 ccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctca-taaacttcc 34919133  T
Q  294 ctg-gcttcgttcaacgcgatgccaggtatcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaacatgatcatcttcaatctcaac 392  Q
    | |  ||||  ||||| ||||||||  |||| | ||| ||||||| |||  | || ||||| |||||||||| ||| ||||   ||||||| || |||||    
T  34919132 cagaacttctctcaacacgatgccacttatcatccttctcttcctgctctttgtttctctcaccacttatctgcaacacatttccatcttctatttcaac 34919033  T
Q  393 cttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttccagtc 464  Q
     |||||||| || |||||||  || ||||||||  |  |||| ||||| |||||  ||||||| ||||||||    
T  34919032 tttcacttcttctttcttcaaaccaggaagatctacactgaacacgtgagcttcttgtgtttctttccagtc 34918961  T

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Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 172 - 467
Target Start/End: Original strand, 36296478 - 36296773
Alignment:
Q  172 acatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggcaacc 271  Q
    |||||||| |||||||| ||  | || |||||| | ||||| || ||||||||||||||  |||||||||||| ||||| ||| ||||| || ||||| |    
T  36296478 acatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcacctgatccatcttggcattttcgggcaatc 36296577  T
Q  272 taaaccgccggagaaaacttccctggcttcgttcaacgcgatgccaggtatcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaac 371  Q
    | |||| ||  | |||  ||||   ||| || || |||||||||||    | |||||||||||| |||||||  |||||||||||||| ||||  | |||    
T  36296578 tgaacctcctcataaactttccactgctacgctccacgcgatgccattggttgttcttgtcttctttctcaacgttcctctctccactaatctgaagaac 36296677  T
Q  372 atgatcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttccagtcaat 467  Q
        ||||||||||| |||||||||||||| ||||||||||  || |||||||| ||||| || ||||||||||| || || |||||||| |||||    
T  36296678 tctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtgcttctggggtctccttccaatcaat 36296773  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 467
Target Start/End: Original strand, 35072705 - 35073000
Alignment:
Q  172 acatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggcaacc 271  Q
    |||||||| |||||||| ||  | || |||||| ||||||| || ||||||||||||||  |||||||||| | |||||  || |||||||| ||  | |    
T  35072705 acatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggttatc 35072804  T
Q  272 taaaccgccggagaaaacttccctggcttcgttcaacgcgatgccaggtatcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaac 371  Q
    |||||| ||  |  ||  ||||   ||| || || || ||||||||   ||| ||||| ||||| || ||||| |||||||| || |||||||  | |||    
T  35072805 taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttcctctcaccgcttatctgaagaac 35072904  T
Q  372 atgatcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttccagtcaat 467  Q
       |||||||||||| |||||||||||||||||||||||||  || |||||||| || ||||| || || ||||| || || |||||||| |||||    
T  35072905 cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaatcaat 35073000  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 321 - 461
Target Start/End: Complemental strand, 35097828 - 35097688
Alignment:
Q  321 atcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaacatgatcatcttcaatctcaaccttcacttcctccttcttcacgccggga 420  Q
    ||||||||| ||||| |||||||  ||||||||||| |||||||  | |||   |||| ||||||| |||||||||||||| ||||||||||  || |||    
T  35097828 atcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccagga 35097729  T
Q  421 agatcggctttgaagacgtgtgcttccggtgtttccttcca 461  Q
    ||||| || | ||| || |||||||| || || ||||||||    
T  35097728 agatcagcctcgaacacatgtgcttctggggtctccttcca 35097688  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 375 - 467
Target Start/End: Complemental strand, 35106952 - 35106860
Alignment:
Q  375 atcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttccagtcaat 467  Q
    |||||||||||| |||||||||||||||||||||||||  || |||||||| || ||||| || || ||||| || || |||||||| |||||    
T  35106952 atcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaatcaat 35106860  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 434
Target Start/End: Original strand, 36936005 - 36936064
Alignment:
Q  375 atcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaa 434  Q
    ||||||||||||||| || |||||||||||||||||||  || |||||||| || |||||    
T  36936005 atcatcttcaatctctactttcacttcctccttcttcattcctggaagatccgccttgaa 36936064  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 444
Target Start/End: Original strand, 36940703 - 36940772
Alignment:
Q  375 atcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgct 444  Q
    ||||||||||||||| || ||| |||||||||||||||  || |||| ||| || ||||| |||||||||    
T  36940703 atcatcttcaatctctactttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgct 36940772  T

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Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 172 - 467
Target Start/End: Original strand, 24014204 - 24014499
Alignment:
Q  172 acatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggcaacc 271  Q
    |||||||| |||||||| ||  | || |||||| ||||||| || ||||||||||||||  |||||||||| | |||||  || ||||| || |||||||    
T  24014204 acatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattttcgggcaacc 24014303  T
Q  272 taaaccgccggagaaaacttccctggcttcgttcaacgcgatgccaggtatcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaac 371  Q
    | || | ||  |  ||  ||||   ||| || || || ||||||||   ||||||||| ||||| |||||||  ||||||||||| |||||||  | |||    
T  24014304 tgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaacattcctctctccgcttatctgaagaac 24014403  T
Q  372 atgatcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttccagtcaat 467  Q
       |||| ||||||| |||||||||||||||||||||||||  || |||||||| || ||||| || |||||||| || || |||||||| |||||    
T  24014404 cctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttccaatcaat 24014499  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 461
Target Start/End: Original strand, 24040964 - 24041050
Alignment:
Q  375 atcatcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagacgtgtgcttccggtgtttccttcca 461  Q
    |||||||||||| |||||||||||||| ||||||||||  || |||||||| || ||||| || |||||||| || || ||||||||    
T  24040964 atcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttcca 24041050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 321 - 464
Target Start/End: Complemental strand, 3123219 - 3123076
Alignment:
Q  321 atcgttcttgtcttccttctcaattttcctctctccacttatcttcaaaacatgatcatcttcaatctcaaccttcacttcctccttcttcacgccggga 420  Q
    ||||||||||||||| |||||||   |||| ||||| |||||||  | ||| | |||||||||||| ||||||||||| || ||||||||||  || |||    
T  3123219 atcgttcttgtcttctttctcaacggtcctttctccgcttatctgaagaaccttatcatcttcaatttcaaccttcacctcttccttcttcaaccctgga 3123120  T
Q  421 agatcggctttgaagacgtgtgcttccggtgtttccttccagtc 464  Q
    ||||| |||||||| || ||||||||  | |||||||| |||||    
T  3123119 agatcagctttgaacacatgtgcttctagagtttcctttcagtc 3123076  T

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