View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19549_low_10 (Length: 306)
Name: NF19549_low_10
Description: NF19549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19549_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 149 - 282
Target Start/End: Original strand, 36783697 - 36783830
Alignment:
| Q |
149 |
agagtggagaacgaaagattgattttacttaaggtaagcgctaatgatacgtctgagagattgaatttcaagagcttcttcaagcttcaaacgacgacgt |
248 |
Q |
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| T |
36783697 |
agagtggagaacgaaagagtgattttacttaaggtaagcgctaatgatacgtctgagagattgaatttcaagagcttcttcaagcttcaaacgacgacgt |
36783796 |
T |
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| Q |
249 |
tgttcctcttcagcgtcttccataaccgtttaag |
282 |
Q |
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| T |
36783797 |
tgttcctcttcagcgtcttccataaccgtttaag |
36783830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 36783563 - 36783608
Alignment:
| Q |
17 |
attcataacatcaacattagcatacattaaattgatctaaatgcat |
62 |
Q |
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| T |
36783563 |
attcataacatcaacattagcatacattaaattgatctaaatgcat |
36783608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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