View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19549_low_11 (Length: 293)
Name: NF19549_low_11
Description: NF19549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19549_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 13046712 - 13046977
Alignment:
| Q |
15 |
ataattcttaattttgttcttaaactcttatctcatgataatactgcttttgttggccgaattgcccagcacgttgttgagttaaaatgttaannnnnnn |
114 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13046712 |
ataattcttaattttgttcttaaactcttatctcgtgataatgctgcttttgttggccgaattgctcagcacgttgttgagttaaaatgttaattttttt |
13046811 |
T |
|
| Q |
115 |
--ggttaatagcccctattgctatgaagtaagttgtgagattttagtaa-ttttaatctatatctatattgtgaaatttcagcttgtatcgctttgattg |
211 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13046812 |
ttggttattagcccctattgctatgaagtaagttgtgagattttagtaacttttaatctatatctatattgtgaaatttcagcttgtatcgcttggattg |
13046911 |
T |
|
| Q |
212 |
ttttgttttgtttcagtatacatgcatttgaatatatacttgttaagtaaaattggaacatgaaat |
277 |
Q |
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|||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
13046912 |
ttttattttgtttcagtatacatacatttgaatatataattgttaagttaaattggaacatgaaat |
13046977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 13052933 - 13053195
Alignment:
| Q |
15 |
ataattcttaattttgttcttaaactcttatctcatgataatactgcttttgttggccgaattgcccagcacgttgttgagttaaaatgttaannnnnnn |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
13052933 |
ataattcttaattttgttcttaaactcttatctcatgataatgctgcttttgttggtcgaattgctcagcacgttgttgagttaaaatgttaattttttt |
13053032 |
T |
|
| Q |
115 |
-ggttaata-gcccctattgctatgaagtaagttgtgagattttagtaa-ttttaatctatatctatattgtgaaatttcagcttgtatcgctttgattg |
211 |
Q |
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| T |
13053033 |
tggttaataagcccctattgctatgaagtaagttgtgagattttagtaacttttaatctatatctatattgtgaaatttcagtttgtatcgcttggattg |
13053132 |
T |
|
| Q |
212 |
ttttgttttgtttcagtatacatgcatttgaatatatacttgttaagtaaaattggaacatga |
274 |
Q |
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| T |
13053133 |
ttttgttttgtttcagtatacatacatttgaatatataattgttaagttaaattggaacatga |
13053195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 13062002 - 13062267
Alignment:
| Q |
15 |
ataattcttaattttgttcttaaactcttatctcatgataatactgcttttgttggccgaattgcccagcacgttgttgagttaaaatgttaannnnnnn |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| |||||||||||||||||||| |
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| T |
13062002 |
ataattctttattttgttcttaaactcttatctcatgataatgctgcttttgttggtcgaattgctcagcactttgttgagttaaaatgttaattttttt |
13062101 |
T |
|
| Q |
115 |
--ggttaatagcccctattgctatgaagtaagttgtgagattttagtaa-ttttaatctatatctatattgtgaaatttcagcttgtatcgctttgattg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13062102 |
ttggttaatagcccctattgctatgaagtaagttgtgagattttagtaacttttaatctatatctatattgtgaaatttcagcttgtatcgcttggattg |
13062201 |
T |
|
| Q |
212 |
ttttgttttgtttcagtatacatgcatttgaatatatacttgttaagtaaaattggaacatgaaat |
277 |
Q |
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| T |
13062202 |
ttttgttttgtttcagtatacatacatttgaatatataattgttaagttaaattggatcatgaaat |
13062267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 6477147 - 6477229
Alignment:
| Q |
18 |
attcttaattttgttcttaaactcttatctcatgataatactgcttttgttggccgaattgcccagcacgttgttgagttaaa |
100 |
Q |
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||||||| ||||||||||||||||||||||| |||||| ||| |||||| | ||||||| ||| | |||||||||||||| |
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| T |
6477147 |
attcttatttttgttcttaaactcttatctctggataatgctgattttgtctgatgaattgctcagtatgttgttgagttaaa |
6477229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 6480218 - 6480292
Alignment:
| Q |
26 |
ttttgttcttaaactcttatctcatgataatactgcttttgttggccgaattgcccagcacgttgttgagttaaa |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||| |||||| | ||||||| ||| | |||||||||||||| |
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| T |
6480218 |
ttttgttcttaaactcttatctcttgataatgctgattttgtctgatgaattgctcagtatgttgttgagttaaa |
6480292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 6491639 - 6491713
Alignment:
| Q |
26 |
ttttgttcttaaactcttatctcatgataatactgcttttgttggccgaattgcccagcacgttgttgagttaaa |
100 |
Q |
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| T |
6491639 |
ttttgttcttaaactcttatctcttgataatgctgattttgtctgatgaattgctcagtatgttgttgagttaaa |
6491713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 6482234 - 6482270
Alignment:
| Q |
20 |
tcttaattttgttcttaaactcttatctcatgataat |
56 |
Q |
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| T |
6482234 |
tcttatttttgttcttaaactcttatctcttgataat |
6482270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 6493655 - 6493691
Alignment:
| Q |
20 |
tcttaattttgttcttaaactcttatctcatgataat |
56 |
Q |
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||||| ||||||||||||||||||||||| ||||||| |
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| T |
6493655 |
tcttatttttgttcttaaactcttatctcttgataat |
6493691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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