View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19549_low_3 (Length: 501)
Name: NF19549_low_3
Description: NF19549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19549_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 20374136 - 20373646
Alignment:
| Q |
1 |
catggcagttgaaagcggggaactcactatttagtgagcaagtgatacaaatcaattgatgagagaacgaaaattagattcatcatatttctttaaactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
20374136 |
catggcagttgaaagcggggaactcactatttagtgagcaagtgatacaaatcaattgatgagagaacgaaaattagattcatcatatttcttcaaactt |
20374037 |
T |
|
| Q |
101 |
atgttaattccatttacatcaaaattttgttgctgatagtattcacgagtgatcttattaccgcatttagagatttgttatttatcaagaattgaagttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20374036 |
atgttaattccatttacatcaaaattttgttgctgatagtattcacgagtgatcttattaccgcatttagagatttgttatttatcaagaattgaagttt |
20373937 |
T |
|
| Q |
201 |
aaagatatttctgcaaattaatatatgttgaatattcttgttctgcttgtttttagacctagtgcatccaagcaagaattattactcattatttatatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20373936 |
aaagatatttctgcaaattaatatatgttgaatattcttgttctgcttgtttttagacctagtgcatccaagcaagaattattactcattatttatatgt |
20373837 |
T |
|
| Q |
301 |
tgattagaatctaatcttcaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaa |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
20373836 |
tgattagaatctaatctttaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcacggttgaaaattgttgcagcacagtttaa |
20373737 |
T |
|
| Q |
401 |
cgtttatcagctcctctttcgtgtatggtgtgagcttccagtggctgcagtttgcattggtgtttagtagtttgtttgtgttttttctctg |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20373736 |
cgtttatcagctcctctttcgtgtatggtgtgagcttccagtggctgcagtttgcattggtgtttagtagtttgtttgtgttttttctctg |
20373646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 82 - 263
Target Start/End: Original strand, 13397811 - 13397992
Alignment:
| Q |
82 |
atcatatttctttaaacttatgttaattccatttacatcaaaattttgttgctgatagtattcacgagtgatcttattaccgcatttagagatttgttat |
181 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||| |||||||| || ||||| |
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|
| T |
13397811 |
atcatatttcttcaaacttatattaattccatttacatataaattttgttgctgatagtatgcaggagtgatcctattaccgtatttagagcttggttat |
13397910 |
T |
|
| Q |
182 |
ttatcaagaattgaagtttaaagatatttctgcaaattaatatatgttgaatattcttgttctgcttgtttttagacctagt |
263 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||||||||||||| |||| |||||||||||||||| | |||||||||||| |
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|
| T |
13397911 |
ttatcaagaattgaagtataacgatatttttgcaaattaatatatattgagtattcttgttctgcttctgtttagacctagt |
13397992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 51 - 262
Target Start/End: Original strand, 20407615 - 20407830
Alignment:
| Q |
51 |
atcaattgatgagagaacgaaaattagattcatcatatttctttaaacttatgttaattccatttacatcaaaattttgttgctgatagtattcacgagt |
150 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| |||| |||||||| |||||| |||||||||| ||| | ||||||||||||||| | |||| |
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|
| T |
20407615 |
atcaattgatgagaaaacgaaaattaggttcatcatatatcttcaaacttatattaattgcatttacatctaaagtctgttgctgatagtatgaatgagt |
20407714 |
T |
|
| Q |
151 |
gatcttat----taccgcatttagagatttgttatttatcaagaattgaagtttaaagatatttctgcaaattaatatatgttgaatattcttgttctgc |
246 |
Q |
| |
|
|||| ||| ||| ||||||||| || ||| |||||||||||||||||| |||||||| || ||| ||||||||||| |||||| ||||||||| | |
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|
| T |
20407715 |
gatcctataaccaaccacatttagagcttggttctttatcaagaattgaagtataaagatagttttgcgaattaatatatattgaattttcttgttccga |
20407814 |
T |
|
| Q |
247 |
ttgtttttagacctag |
262 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
20407815 |
ttgtgattagacctag |
20407830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 51 - 462
Target Start/End: Original strand, 20442238 - 20442680
Alignment:
| Q |
51 |
atcaattgatgagagaacgaaaatta-gattcatcatatttctttaaacttatgttaattccatttacatcaaaattttgttgctgatagtattcacgag |
149 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||| |||| |||| |||||||| |||| || ||||||||| || ||||||||||||||| | ||| |
|
|
| T |
20442238 |
atcaattgatgaaaaaacgaaaattaagattcattatatatcttcaaacttatattaactctatttacatcttaaggatgttgctgatagtatgaatgag |
20442337 |
T |
|
| Q |
150 |
tgatcttattaccg----catttagagatttgttatttatcaagaattgaagtttaaagatatttctgcaaattaatatatgttgaatattcttgttctg |
245 |
Q |
| |
|
||||| || ||| ||||||||| || ||| |||||||||||||||||| |||||||| || || |||||||||||| ||||||||||||||| | |
|
|
| T |
20442338 |
tgatcccataaccaaccacatttagagcttggttctttatcaagaattgaagtataaagatagttttgaaaattaatatatattgaatattcttgttgcg |
20442437 |
T |
|
| Q |
246 |
cttgtttttagacctagtgcatcc-------------aagcaagaattattactcattatttatatgt--tgat--------------tagaatctaatc |
316 |
Q |
| |
|
||| |||||| ||||||||||| ||||||||||||||||||||||||||| ||| || | |||||||||||| |
|
|
| T |
20442438 |
attgggtttagatctagtgcatccatgttgattagggaagcaagaattattactcattatttatgtgtactggttaatggtattgctatagaatctaatc |
20442537 |
T |
|
| Q |
317 |
ttcaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaacgtttatcagctcctc |
416 |
Q |
| |
|
|| ||||||| ||||| ||| |||||| || |||||| ||||||||||| ||||||||| ||||||||| ||| ||| | || | || ||||||| || |
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|
| T |
20442538 |
tttaataacacagcccacattttacctatgatgtaggtttgtattcatgatagcacggttaaaagttgttccagaacacatcaatg-ttgtcagctcgtc |
20442636 |
T |
|
| Q |
417 |
tttcgtgtatggtgtgagcttccagtggctgcagtttgcattggtg |
462 |
Q |
| |
|
||| ||||||||||| |||||||||||||| |||||| |||||| |
|
|
| T |
20442637 |
gttc--gtatggtgtgaccttccagtggctgcggtttgcgttggtg |
20442680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 473
Target Start/End: Original strand, 20423459 - 20423626
Alignment:
| Q |
305 |
tagaatctaatcttcaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaacgtt |
404 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||||||||| |||||| ||||||||||| ||||||| |||||||||||||||| ||| | || | | |
|
|
| T |
20423459 |
tagaatctaatctttaataacacagccctcattttacctgtgatgtaggtttgtattcatgtcagcacgattgaaagttgttgcagaacaaatcaatg-t |
20423557 |
T |
|
| Q |
405 |
tatcagctcctctttcgtgtatggtgtgagcttccagtggctgcagtttgcattggtgtttagtagttt |
473 |
Q |
| |
|
| ||||||| || |||||||||||||||| |||| ||||| ||| || || |||||| || ||||||| |
|
|
| T |
20423558 |
tgtcagctcgtcgttcgtgtatggtgtgaccttctagtggatgcggtgggctttggtgcttggtagttt |
20423626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 20423244 - 20423335
Alignment:
| Q |
51 |
atcaattgatgagagaacgaaaattagattcatcatatttctttaaacttatgttaattccatttacatcaaaattttgttgctgatagtat |
142 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||| || | ||||||||||||||| |
|
|
| T |
20423244 |
atcaattgatgagacaacgaaaattagattcatcatatatcttcaaacttatagtaattccatttacatctgaagtatgttgctgatagtat |
20423335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 314 - 404
Target Start/End: Original strand, 20339679 - 20339771
Alignment:
| Q |
314 |
atcttcaataacatagccctc--atgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaacgtt |
404 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
20339679 |
atctttaataacatagccctcgtatgttacctttggtgtagggttgtattgagggcagcacggttgaaggttgttgcagcccagttcaacgtt |
20339771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 305 - 390
Target Start/End: Complemental strand, 20132916 - 20132831
Alignment:
| Q |
305 |
tagaatctaatcttcaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcag |
390 |
Q |
| |
|
||||||| || ||| |||||||||||||||||||||| | | |||||||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
20132916 |
tagaatccaacctttaataacatagccctcatgttacattttgtgtagggttgtattcatgggagcacaattgaaggttgttgcag |
20132831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 412
Target Start/End: Complemental strand, 20140146 - 20140036
Alignment:
| Q |
305 |
tagaatctaatcttcaataacatagccctcatgttacctgtgg---tgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaac |
401 |
Q |
| |
|
||||||||| |||| ||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||| ||||| ||| ||||||||| || ||| |
|
|
| T |
20140146 |
tagaatctactctttaataacataaccctcatgtcacctgtgggattgtagggttgtattcatgggagcacaattgaaggttactgcagcacacttcaac |
20140047 |
T |
|
| Q |
402 |
gtttatcagct |
412 |
Q |
| |
|
||| ||||||| |
|
|
| T |
20140046 |
gttgatcagct |
20140036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 20339477 - 20339612
Alignment:
| Q |
104 |
ttaattccatttacatcaaaattttgttgctgatagtattcacgagtgatcttattaccgcatttagagatttgttatttatcaagaattgaagtttaaa |
203 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||| ||| ||| ||| |||| || |||| || || ||||| || ||||| ||| || ||||||||| |||| |
|
|
| T |
20339477 |
ttaatttcatttacttcaaaattttattgctaatactatgcacaagtgttcctatttccacagttagatcttggttatctataaataattgaagtataaa |
20339576 |
T |
|
| Q |
204 |
gatatttctgcaaattaatatatgttgaatattcttg |
240 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||| |
|
|
| T |
20339577 |
gatattt-tgaaaattattatatgttgaatattcttg |
20339612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13397760 - 13397800
Alignment:
| Q |
1 |
catggcagttgaaagcggggaactcactatttagtgagcaa |
41 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13397760 |
catggcagttgaaagcggggaactaactatttagtgagcaa |
13397800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 20407543 - 20407612
Alignment:
| Q |
85 |
atatttctttaaacttatgttaattccatttacatcaaaattttgttgctgatagtattcacgagtgatc |
154 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||| ||| | || |||||||||||| |||||||||| |
|
|
| T |
20407543 |
atatatcttcaaacttatattaattccatttacatctaaagtctgctgctgatagtatgaacgagtgatc |
20407612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 20423172 - 20423241
Alignment:
| Q |
85 |
atatttctttaaacttatgttaattccatttacatcaaaattttgttgctgatagtattcacgagtgatc |
154 |
Q |
| |
|
|||| |||| |||||||| ||||||||||| ||||| ||| | ||||||||||||||| |||||||||| |
|
|
| T |
20423172 |
atatatcttcaaacttatattaattccattaacatctaaagtctgttgctgatagtatgaacgagtgatc |
20423241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 473
Target Start/End: Original strand, 20407959 - 20408025
Alignment:
| Q |
407 |
tcagctcctctttcgtgtatggtgtgagcttccagtggctgcagtttgcattggtgtttagtagttt |
473 |
Q |
| |
|
||||||| || |||||||||||||||| |||| ||| ||||| |||||| |||||| || ||||||| |
|
|
| T |
20407959 |
tcagctcgtcgttcgtgtatggtgtgaccttctagtagctgcggtttgcgttggtgcttggtagttt |
20408025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 15963142 - 15963194
Alignment:
| Q |
364 |
tggcagcacggttgaaagttgttgcagcacagtttaacgtttatcagctcctc |
416 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||||| ||||||||||| |
|
|
| T |
15963142 |
tggcagcatggttgaaagttgttgcagcacacttcaacgttgatcagctcctc |
15963194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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