View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19549_low_5 (Length: 446)
Name: NF19549_low_5
Description: NF19549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19549_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 387
Target Start/End: Original strand, 24552930 - 24553311
Alignment:
| Q |
21 |
ggtttgttcaaatagcactatacgatagtgttaaaatactactatagccgcaatttgacaaacattttgtgctaaaaagcggattgcagaataatagtga |
120 |
Q |
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| T |
24552930 |
ggtttgttcgaatagcactacacgatagtgttaaaatgatactatagacggaatttgacaaaaaatttgtgctaaaaagtgtattgcagagtaatagtaa |
24553029 |
T |
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| Q |
121 |
tttgtgcattccaggtagaactaaacaagttttagatgataatgatttggtcttcttttcac---------------atgactcagatcaaacgttatca |
205 |
Q |
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| T |
24553030 |
tatgtgcattccgggtagaaacaaacaagattttgatgataatgatttggtcttcttttcactaatccaatcatttcatgactcagatcaaacattatca |
24553129 |
T |
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| Q |
206 |
ggagggaaagtactgatcgatgtgtcgtattttggatggcacgtatatagtgagaccaaagacctttgtggagaatcatcttgccctatttcggttggtg |
305 |
Q |
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| T |
24553130 |
ggagggaaagtactgatcgatgtgtcgtattttggatggcacgtatatagtgagaccaaagacctttgtggagaatcatcttgccctatttcggttggtg |
24553229 |
T |
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| Q |
306 |
attttgtgcttgcacattcacaagttttacctggattcaccccacctgtaagtcattgttgttagttttattccttaaatag |
387 |
Q |
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| T |
24553230 |
attttgtgcttgcacattcacaagttttacctggattcaccccacctgtaagtcattgttgttagttttattccttgaatag |
24553311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 182 - 387
Target Start/End: Original strand, 24563174 - 24563379
Alignment:
| Q |
182 |
catgactcagatcaaacgttatcaggagggaaagtactgatcgatgtgtcgtattttggatggcacgtatatagtgagaccaaagacctttgtggagaat |
281 |
Q |
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|||||||||| |||| | ||||||| ||||||| || || ||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
24563174 |
catgactcaggtcaagcattatcagaagggaaactagtggtcgatgtgtcgtattttggatggcatgtatatagtgagacccatgacctttgtggagaat |
24563273 |
T |
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| Q |
282 |
catcttgccctatttcggttggtgattttgtgcttgcacattcacaagttttacctggattcaccccacctgtaagtcattgttgttagttttattcctt |
381 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||||||| |
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| T |
24563274 |
catcttgccctatttcggttggtgattttgtgattgctcattcacaagttttacctgcatacaccccacctgtaagtcattgctgttaattttattcctt |
24563373 |
T |
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| Q |
382 |
aaatag |
387 |
Q |
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||||| |
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| T |
24563374 |
gaatag |
24563379 |
T |
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