View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19549_low_6 (Length: 412)
Name: NF19549_low_6
Description: NF19549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19549_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 72 - 395
Target Start/End: Original strand, 34437687 - 34438024
Alignment:
| Q |
72 |
aatccaaattccaaacatttaaatcattatttgatatacaattgtaacattacacttataaagtaatgatttatcaa----gtatgtannnnnnnnnnnn |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34437687 |
aatccaaattccaaacatttaaatcattatttgatatacaattgtaacattacacttataaagtaatgatttatcaagtctgtatgtgtgtgtgtgtgtg |
34437786 |
T |
|
| Q |
168 |
natatat------atatgatttataaaattacacaagaacaagaataattgataagtaggtaggtaaagcaacatactggtgttccactgacagctctaa |
261 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437787 |
tatatatatatatatatgatttataaaattacacaagaacaagaataattgaaaagtaggtaggtaaagcaacatactggtgttccactgacagctctaa |
34437886 |
T |
|
| Q |
262 |
cagctgagactgaggcaaccatggctgtgttgtgttgtcttgc----aaagatagagaaatgtgtattgttttggggtgagcaaatttgtccagagggaa |
357 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437887 |
cagctgagactgaggcaaccatggctgggttgtgttgtcttgcaaagaaagatagagaaatgtgtattgttttggggtgagcaaatttgtccagagggaa |
34437986 |
T |
|
| Q |
358 |
tgaatttatagtagtgactcaattgagtgtacataaat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437987 |
tgaatttatagtagtgactcaattgagtgtacataaat |
34438024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 34437611 - 34437656
Alignment:
| Q |
8 |
tgagatgaacgatcttaataggacggtctagattgtttgattggaa |
53 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34437611 |
tgagatgtacgatcttaataggtcggtctagattgtttgattggaa |
34437656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University