View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19549_low_7 (Length: 393)
Name: NF19549_low_7
Description: NF19549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19549_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 36224190 - 36223823
Alignment:
| Q |
8 |
ccaagaatattgatggttcaaaccacaactctaaatcaagcattctccatgctttcccttgttataataatattccgtacaatatggaccatacttactg |
107 |
Q |
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| T |
36224190 |
ccaaaaatattgatggttcaaaccacaactctaaatcaagcattctccatgctttcccttgttataataatattccgtacaatatggaccatacttacta |
36224091 |
T |
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| Q |
108 |
caatagtaagttaataaccgcatgcttatgttgcttcaaatttttatatataaagactaaagtacataaaaattattagattagaacataaacaagttca |
207 |
Q |
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| T |
36224090 |
caatagtaagt-aataaccgcatgcttatgttgcttcaaatttttatatataaagactaaagtacataaaaattattagattagaacataaaca-gttca |
36223993 |
T |
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| Q |
208 |
aagatgactgatcaacttagaactgattccaaagattataggactgagcttctttccccaaacatagcttctgagaatgtgtctatggctaggcaacctt |
307 |
Q |
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| T |
36223992 |
aagatgactgatcaacttagaactgattccaaagattataggactgagcttctttccccaaacatagcttctgagaatgtgtctatggctaggcaacctt |
36223893 |
T |
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| Q |
308 |
catggaggatcaatatggatgaacatcgcataccggaaaggcaaatggagtctcattttggctttggatt |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223892 |
catggaggatcaatatggatgaacatcgcataccggaaaggcaaatggagtctcattttggctttggatt |
36223823 |
T |
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