View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19549_low_8 (Length: 382)
Name: NF19549_low_8
Description: NF19549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19549_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 1759984 - 1760355
Alignment:
| Q |
1 |
aggaagagagtaagaaagttggttcat-------ttttccaaataacaacaaagaagggaaagatgaaaattagaacaagaacaaagagaaaaatttgga |
93 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1759984 |
aggaagagagtaagaaagttggttcatcatctggttttccaaataacaacaaagaagagaaagatgaaaattagaacaagaacaaagagaaaaatttgga |
1760083 |
T |
|
| Q |
94 |
ttcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcacaggtgttgggagggcaccaaaatgctggtaaggcggaacatgcattagaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| |
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|
| T |
1760084 |
ttcaaggtctttttcatgtttattttgcaagagaaaatttactacttcacaggcgttgggagggcaccaaaatgcttataaggcggaacgtgcattagaa |
1760183 |
T |
|
| Q |
194 |
aagcaacgtaaacaaaggtatgaattaggtttagggtaacctcactttaacccttattttagttatccaaat-cnnnnnnnacaccctcgtattataggg |
292 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || | ||||||||||||||||||| |
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| T |
1760184 |
aagcaacgtaaacaaaggtaggaattaggtttagggtaacctcattttaacccttattttagttatccagatactttttttacaccctcgtattataggg |
1760283 |
T |
|
| Q |
293 |
cactcggtgttggaatgaaacctatgatccaaaaaccatcttatattaaccctaggattacgccacatagtt |
364 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
1760284 |
cactcggtgttggaatggaacctatgatccaaaaaccatctgatattaaccctaggattacgtcacatagtt |
1760355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 1724448 - 1724615
Alignment:
| Q |
98 |
aggtctttttcatgtttattttgcaagagaaaatttgctacttcacaggtgttgggagggcaccaaaatgctggtaaggcggaacatgcattagaaaagc |
197 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||||| |||| ||||||| |||||| |
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| T |
1724448 |
aggtctttttcatgcttattttgcaagagaaaattttctacttcacaggcgttaggagggcaccaaaatgctcataaggcagaacgtgcattaaaaaagc |
1724547 |
T |
|
| Q |
198 |
aacgtaaacaaaggtatgaattaggtttagggtaacctcactttaacccttattttagttatccaaat |
265 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
1724548 |
aacgtaaactaaggtatgatttaggtttaggagaacctcactttaacctttattttagttatccaaat |
1724615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 28 - 360
Target Start/End: Original strand, 1738973 - 1739300
Alignment:
| Q |
28 |
ttttccaaataacaacaaagaagggaaagatgaaaattagaacaagaacaaagagaaaaatttggattcaaggtctttttcatgtttattttgcaagaga |
127 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| | |||||||| ||||||||||| |||||||||| |||||||||||| || |
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| T |
1738973 |
ttttccaaataacaacaataaagggaaagatga------gaacaagaatgaggagaaaaaaatggattcaaggactttttcatgcttattttgcaaggga |
1739066 |
T |
|
| Q |
128 |
aaatttgctacttcacaggtgttgggagggcaccaaaatgctggtaaggcggaacatgcattagaaaagcaacgtaaacaaaggtatgaattaggtttag |
227 |
Q |
| |
|
|||||| ||||||| || | ||| || || |||||||| ||| |||||| |||| ||| || ||||||||| |||||||||||||||||||||||||| |
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|
| T |
1739067 |
aaattttctacttcgcaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcgttgcaaaagcaacttaaacaaaggtatgaattaggtttag |
1739166 |
T |
|
| Q |
228 |
ggtaacctcactttaacccttattttagttatccaaa-tcnnnnnnnacaccctcgtattatagggcactcggtgttggaatgaaacctatgatccaaaa |
326 |
Q |
| |
|
|| |||||| |||||||||||||| | || ||||| | |||||| | |||| |||||||||||||| ||||| || ||||||| ||||| |
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| T |
1739167 |
ggcaacctcttcttaacccttatttttgctacccaaacactttttttacaccccctaattacggggcactcggtgttagaatggaatctatgattcaaaa |
1739266 |
T |
|
| Q |
327 |
accatcttatattaaccctaggattacgccacat |
360 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| |
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|
| T |
1739267 |
accatcttatattaaccctaggattgccccacat |
1739300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 78 - 360
Target Start/End: Original strand, 1744360 - 1744643
Alignment:
| Q |
78 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcacaggtgttgggagggcaccaaaatgctggtaaggc |
177 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||||| | ||| || || |||||||| ||| |||| | |
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|
| T |
1744360 |
aagagaaaaaaatggattcaaggtctttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataagac |
1744459 |
T |
|
| Q |
178 |
ggaacatgcattagaaaagcaacgtaaacaaaggtatgaattaggtttagggtaacctcactttaacccttattttagttatccaaa-tcnnnnnnnaca |
276 |
Q |
| |
|
||||| ||||||| ||||||||| |||||| | ||| | ||||||||||| | | |||| ||||||||||||||||||||||||| | ||| |
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|
| T |
1744460 |
ggaacgtgcattacaaaagcaacttaaacagaagtacgtattaggtttagagcagcctcttcttaacccttattttagttatccaaacactctttttaca |
1744559 |
T |
|
| Q |
277 |
ccctcgtattatagggcactcggtgttggaatgaaacctatgatccaaaaaccatcttatattaaccctaggattacgccacat |
360 |
Q |
| |
|
||| | ||||| |||||||||||||| ||||| || ||||||| ||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
1744560 |
ccccctaattatggggcactcggtgttagaatggaatctatgattcaaaaaccatcttatattaaccccgggattaccccacat |
1744643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 1763562 - 1763481
Alignment:
| Q |
135 |
ctacttcacaggtgttgggagggcaccaaaatgctggtaaggcggaacatgcattagaaaagcaacgtaaacaaaggtatga |
216 |
Q |
| |
|
|||||||||| ||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1763562 |
ctacttcacatacgttaggagggcatcaaaaagctcataaggcggaacatgcattagaaaagcaacgtaaacaaaggtatga |
1763481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 92 - 364
Target Start/End: Original strand, 3167250 - 3167532
Alignment:
| Q |
92 |
gattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcacaggtgttgggagggcaccaaaatgctggtaaggcggaacatgcattag |
191 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| |||| ||||| | ||| ||||| || || ||||| |||||| |||| ||| |||| |
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|
| T |
3167250 |
gattcaaagtctttttcatgttgtttttgcaagagaaaattttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttag |
3167349 |
T |
|
| Q |
192 |
aaaagcaacgtaaacaaaggtatgaa---------ttaggtttagggtaacctcactttaacccttattttagttatccaaat-cnnnnnnnacaccctc |
281 |
Q |
| |
|
|||| ||||||||||||| ||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
3167350 |
aaaaacaacgtaaacaaaagtatgaaaatggtgtttttggtttagggcaaccttactttaacccttattttagttatccaaatactctttttacaccctc |
3167449 |
T |
|
| Q |
282 |
gtattatagggcactcggtgttggaatgaaacctatgatccaaaaaccatcttatattaaccctaggattacgccacatagtt |
364 |
Q |
| |
|
||||||| || || || | ||||| || | ||||| ||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
3167450 |
ttattataaggggcttggaactagaatggaatccatgattcaaaagccatcttatattaaccctaggattactccacatagtt |
3167532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 78 - 263
Target Start/End: Original strand, 2022788 - 2022982
Alignment:
| Q |
78 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcacaggtgttgggagggcaccaaaatgctggtaaggc |
177 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||| |||||||||||||||||| ||||||| || | || ||||| ||||| ||||| |||||| |
|
|
| T |
2022788 |
aagagaagaattcagattcaaagtctttttcatgttgtttttgcaagagaaaattttctacttcgcaagccttaggaggacaccagaatgcccataaggc |
2022887 |
T |
|
| Q |
178 |
ggaacatgcattagaaaagcaacgtaaacaaaggtatgaa---------ttaggtttagggtaacctcactttaacccttattttagttatccaa |
263 |
Q |
| |
|
|||| | | |||||||| ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
2022888 |
tgaacgtacgttagaaaaacaacgtaaacaaaggtatgaaagtggtgcttttggtttagggcaacctcactttaacccttattttagttatccaa |
2022982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 78 - 216
Target Start/End: Complemental strand, 3157034 - 3156896
Alignment:
| Q |
78 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcacaggtgttgggagggcaccaaaatgctggtaaggc |
177 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| | ||||| |||||| ||||| |||||||||| | ||||||||| ||||| || ||| |||||| |
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|
| T |
3157034 |
aagagaagaattcggattcaaggtctttttcatgctccttttgtaagagacaattttctacttcacaagcgttgggaggacaccagaacgctcataaggc |
3156935 |
T |
|
| Q |
178 |
ggaacatgcattagaaaagcaacgtaaacaaaggtatga |
216 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
3156934 |
ggaacgtgctttagaaaagcaacggaaacaaaggtatga |
3156896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 3139282 - 3139182
Alignment:
| Q |
116 |
ttttgcaagagaaaatttgctacttcacaggtgttgggagggcaccaaaatgctggtaaggcggaacatgcattagaaaagcaacgtaaacaaaggtatg |
215 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| ||||||||| || || || || ||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
3139282 |
ttttgcaagagacaattttctacttcacaggcgttgggaggacatcagaacgcacataaggcggaacgggcattagaaaagcaacgtcaacaaaggtatg |
3139183 |
T |
|
| Q |
216 |
a |
216 |
Q |
| |
|
| |
|
|
| T |
3139182 |
a |
3139182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 23852122 - 23852260
Alignment:
| Q |
78 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcacaggtgttgggagggcaccaaaatgctggtaaggc |
177 |
Q |
| |
|
||||||| |||| |||||||| || |||||||| | ||||| ||||| ||||| ||||||| || | ||||||||| ||||| || ||| |||||| |
|
|
| T |
23852122 |
aagagaagaattcagattcaagatccttttcatgctccttttgtaagaggcaattttctacttctcaagcgttgggaggacaccagaacgctcataaggc |
23852221 |
T |
|
| Q |
178 |
ggaacatgcattagaaaagcaacgtaaacaaaggtatga |
216 |
Q |
| |
|
||||| | | |||||||||||||| |||||||||||||| |
|
|
| T |
23852222 |
ggaacgtactttagaaaagcaacggaaacaaaggtatga |
23852260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 23856688 - 23856828
Alignment:
| Q |
77 |
aaagagaaaaatttggattcaaggtctttttcatgtttattt-tgcaagagaaaatttgctacttcacaggtgttgggagggcaccaaaatgctggtaag |
175 |
Q |
| |
|
|||||| | ||||| |||||||| || |||||||| || ||| || |||||| | | | |||||||||| ||||||||| ||||| || ||| |||| |
|
|
| T |
23856688 |
aaagaggagaatttagattcaagatccttttcatgcttttttgtgtaagagacactattctacttcacaatcgttgggaggacaccagaacgctcataag |
23856787 |
T |
|
| Q |
176 |
gcggaacatgcattagaaaagcaacgtaaacaaaggtatga |
216 |
Q |
| |
|
|||||||| | |||||||||||||| |||||||| ||||| |
|
|
| T |
23856788 |
acggaacatactttagaaaagcaacgcaaacaaagatatga |
23856828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 7491254 - 7491190
Alignment:
| Q |
152 |
ggagggcaccaaaatgctggtaaggcggaacatgcattagaaaagcaacgtaaacaaaggtatga |
216 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||| || ||||| ||||||||| |||||||||| |
|
|
| T |
7491254 |
ggagggcatcaaaatgcccataaggcggaacgtgcgttggaaaaacaacgtaaagaaaggtatga |
7491190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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