View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1954_high_1 (Length: 303)
Name: NF1954_high_1
Description: NF1954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1954_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 37 - 299
Target Start/End: Complemental strand, 32725075 - 32724813
Alignment:
| Q |
37 |
ggaacatctatgcaattgcaataggggcgtttaataaaagagcattttgaagtatcaatcctcaaaacaaatgacaatgtgtctaatgaaaatcatgctg |
136 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32725075 |
ggaacaactatgcaattacaataggggcatttaataaaagagcattttgaagtatcaatcctcaaaacaaatgacaatgtgtctaatgaaaatcatgctg |
32724976 |
T |
|
| Q |
137 |
tccgcataaaccagtaatacgtccaaaaaatactcatcaatttgaacatggaaatagattgaaaactggcaacattagttgaattgttacaaattcacta |
236 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
32724975 |
tccgcataaaccagtaatacgtgcaaaaaatactcatcaatttgaacatggaaatagattgaaaactggcaacattagttcaattgttacaaattcaaca |
32724876 |
T |
|
| Q |
237 |
gctgctcctagatacaataaaacctagacctatattacatagaacatacactagtgaaatgaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32724875 |
gctgctcctagatacaataaaacctagacctatattacatagaacatacactagtgaaatgaa |
32724813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University