View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_high_16 (Length: 366)
Name: NF19550_high_16
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 87 - 255
Target Start/End: Original strand, 36468054 - 36468222
Alignment:
| Q |
87 |
tttcttgtttaaattagaaaatctcctacaagacaaaacacttcttctcaatagcaaaaaagacaaattttccattcaaatcttctcacgtcaagcgaaa |
186 |
Q |
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| T |
36468054 |
tttcttgtttaaattagaaaatctcctacaagacaaaacacttcttctcaatagcaaaaaagacaaattttcctttcaaatcttctcacgtcaagcgaaa |
36468153 |
T |
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| Q |
187 |
aaatgctagnnnnnnnnnngacaagaaaaaatgctatttgtatcactcttgttcttccttcttcaacac |
255 |
Q |
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| T |
36468154 |
aaatgctagttttttttttgacaagaaaaaatgctagttgtatcactcttgttcttccttcttcaacac |
36468222 |
T |
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Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 36468265 - 36468323
Alignment:
| Q |
265 |
tccctccactcttctattactcatcgcacaaactctgcacatcacacacactccattta |
323 |
Q |
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| T |
36468265 |
tccctccactcttctattactcatcgcacaaactctgcacatcacacacactccattta |
36468323 |
T |
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