View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19550_high_2 (Length: 703)
Name: NF19550_high_2
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 693
Target Start/End: Original strand, 19654178 - 19654867
Alignment:
| Q |
1 |
tattgttgtccattgttttgtccgttgttactgcgacctcgtcctctaccaccaccatttctgccgcaattgttgtttttgttatgaccgcgtttttgac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
19654178 |
tattgttgtccattgttttgtcccttgttactgcgacctcgtcctctaccgccaccatttttgccgcatttgttgtttttgttctgaccgcgtttttgac |
19654277 |
T |
|
| Q |
101 |
caaaattattacggtgtgctgcatttctggaacctagggtaaaaccacgattgttatcaaa-ttgtcatcactggattggtttgtggtgaggagagcggt |
199 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19654278 |
caaaattattacggtgtgctggatttctggaaccttgagtaaaaccacgattgttaccaaaattgtcatcactggattggtttgtggtgaggagagcggt |
19654377 |
T |
|
| Q |
200 |
acctgcagcattgattgtagcagctgtttgctttgccttgcgggtttcttcgaggatcagcctcgatcgtgcctcatgaaatagcggcaaaggattagtc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19654378 |
acctgcagcattgattgtagcagctgtttgatttgccttgcgggtttcttagaggatcagcctcgatcgtgcctcatgaaatagcggcaaaggattagtc |
19654477 |
T |
|
| Q |
300 |
tattgaataaaaatataaacaccatcatagttctcattctgaccagcaattaattggagaactaacctttggttcgaaaccggtgagccaacgtttgaca |
399 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19654478 |
tgttgaataaaaatataaacaccatcatagttctcattctgacccgcaattaattggagaactaacctttggttcgaaaccggtgagccaacatttgaca |
19654577 |
T |
|
| Q |
400 |
gttgatcaacaattaatcatcttgagttcttggaattggttttccaggtggacaaaatgggaagctttgttgtcctggaagatgttttccaatcgctctc |
499 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19654578 |
gttgatcaacaat----catcttgagttcttggaattggttttccaggtggacagaacgagaagctttgttgtcctggaagatgttttccaatcgctctc |
19654673 |
T |
|
| Q |
500 |
atgtttgttgtgcggttgaaccaggtgacatgatggtgtgaaggaggtcggtggagatcgttctgtaaatccattggttaacgattgcatctaggtgtga |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |
|
|
| T |
19654674 |
atgtttgttgtgcggttgaaccaggtgacatgattgtgtgaaggaggtcggtggagatcgttccgtaaatccattggagaacgattgcatctaggcgtga |
19654773 |
T |
|
| Q |
600 |
ccactgttctttgttactctcggcagatttttccttttctacaacggatccttgtatgttaccggccgttgctttttctttttcctttgatgat |
693 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19654774 |
ccactgttctttgttactctcggcaaatttttccttttctacaacggatccttgtttgttaccggctgttgctttttctttttcctttgatgat |
19654867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 7234793 - 7235221
Alignment:
| Q |
1 |
tattgttgtccattgttttgtccgttgttactgcgacctcgtcctctaccaccaccatttctgccgcaattgttgtttttgttatgaccgcgtttttgac |
100 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
7234793 |
tattgctgtccactgttttgtccgttgttactacgacctcgtcctctaccgccaccatttctgccgcgattgttgtttttgttctgaccgtgtttttgat |
7234892 |
T |
|
| Q |
101 |
caaaattattacggtgtgctgcatttctggaacctagggtaaaaccacgattgttatcaaa-ttgtcatcactggattggtttgtggtgaggagagcggt |
199 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| || | |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7234893 |
caaaattattacggtgtgctggatttctggaaccttgggtaaacccacgattgttaccagagttgtcatcactggactggtttgtggtgaggagagcggt |
7234992 |
T |
|
| Q |
200 |
acctgcagcattgattgtagcagctgtttgctttgccttgcgggtttcttcgaggatcagcctcgatcgtgcctcatgaaatagcggcaaaggattagtc |
299 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7234993 |
acctgcagcattgattgtagcagctgcttgctttgccttgcgggtttcttcgaggatcagcctcgatcgtgcctcatgaaatagcggcaaaggattactc |
7235092 |
T |
|
| Q |
300 |
tattgaataaaaatataaacaccatcatagttctcattctgaccagcaattaattggagaactaacctttggttcgaaaccggtgagccaacgtttgaca |
399 |
Q |
| |
|
| ||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7235093 |
tgttgaataaaaatagcaacaccatcgtagttctcattcagacccgcaattaattggagaactaacctttggttcgaaactggtgagccaacgtttgaca |
7235192 |
T |
|
| Q |
400 |
gttgatcaacaattaatcatcttgagttcttgg |
432 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |
|
|
| T |
7235193 |
gttgatcagc----aatcatcttgagttcttgg |
7235221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 432 - 693
Target Start/End: Original strand, 7235266 - 7235527
Alignment:
| Q |
432 |
gaattggttttccaggtggacaaaatgggaagctttgttgtcctggaagatgttttccaatcgctctcatgtttgttgtgcggttgaaccaggtgacatg |
531 |
Q |
| |
|
|||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
7235266 |
gaattggttttccaggtgaacaacacgagaagctttgttgtcctggaagatgttttccaatcgctcccatgtttgctgtgcggttgaaccaggtgacatg |
7235365 |
T |
|
| Q |
532 |
atggtgtgaaggaggtcggtggagatcgttctgtaaatccattggttaacgattgcatctaggtgtgaccactgttctttgttactctcggcagattttt |
631 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7235366 |
atggtgtgaaggaggtcggtggagatcgttccgtaaatccattggagaacgattgcatccaggcgtgaccattgttctttgttactctcggcagattttt |
7235465 |
T |
|
| Q |
632 |
ccttttctacaacggatccttgtatgttaccggccgttgctttttctttttcctttgatgat |
693 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
7235466 |
ccttttctacaacggatccttctttgttaccggctattgctttttcttttttctttgatgat |
7235527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 432 - 613
Target Start/End: Complemental strand, 17613195 - 17613014
Alignment:
| Q |
432 |
gaattggttttccaggtggacaaaatgggaagctttgttgtcctggaagatgttttccaatcgctctcatgtttgttgtgcggttgaaccaggtgacatg |
531 |
Q |
| |
|
|||||| ||||||||||||||| ||| ||||||||||||||| ||| || ||| || | | || |||| ||| | |||||||||||||||||||| | |
|
|
| T |
17613195 |
gaattgtttttccaggtggacatcatgagaagctttgttgtcccagaaaatatttctcatttgttcccatgcttgatatgcggttgaaccaggtgacaag |
17613096 |
T |
|
| Q |
532 |
atggtgtgaaggaggtcggtggagatcgttctgtaaatccattggttaacgattgcatctaggtgtgaccactgttctttgt |
613 |
Q |
| |
|
|| || ||||| |||||||||||||| ||||||||||| ||| || || |||| |||||||| ||||| | |||||||||| |
|
|
| T |
17613095 |
attgtttgaagaaggtcggtggagattgttctgtaaataaatttgtgaatgattacatctaggcgtgactattgttctttgt |
17613014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University