View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_high_21 (Length: 324)
Name: NF19550_high_21
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 19654191 - 19653993
Alignment:
| Q |
1 |
aatggacaacaataaaatccacgtccatggcagcaacaacagtggccatcatacccacaatggggaccatggggacaacaaccatgggcaggtccacctt |
100 |
Q |
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| T |
19654191 |
aatggacaacaatacaatccacgtccatggcagcaacaacagtagccatcatacccacaatggggaccgtggggacaaaaaccatgggcagctccacctt |
19654092 |
T |
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| Q |
101 |
gtccttaccccacatccaattgagttcttccaccatcaaatcgatcccctttggctacaggaactcgtccaccatagggcctcgaatccttcgactttg |
199 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |
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| T |
19654091 |
gtcgttaccccacatccaattgagttcttccaccatcaaatcgttcccctttggctacaggaattcgtccaccatggggccttgaatccttcgactttg |
19653993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 197 - 305
Target Start/End: Complemental strand, 19653729 - 19653621
Alignment:
| Q |
197 |
ttgaaaactatgaagcttctgaagctgattttcgattttgaacatacattttgctgaatgcgagactcttacaagttatgaccattttccgtactcttga |
296 |
Q |
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| T |
19653729 |
ttgaaaactatgaagcttctgaagctgattttcttttttcaacatacattttgctgaatgcgagactcttacaagttatgaccattttccgtactcttga |
19653630 |
T |
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| Q |
297 |
cctgaaacc |
305 |
Q |
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||||||||| |
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| T |
19653629 |
cctgaaacc |
19653621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 17392666 - 17392745
Alignment:
| Q |
203 |
actatgaagcttctgaagctgattttcgattttgaacatacattttgctgaatgcgagactcttacaagttatgaccatt |
282 |
Q |
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| T |
17392666 |
actatgaagcttgcgaagctgattttcgattcgcaacatatattttgcagaatgcgagacttttacaagttatgaccatt |
17392745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 17377592 - 17377667
Alignment:
| Q |
207 |
tgaagcttctgaagctgattttcgattttgaacatacattttgctgaatgcgagactcttacaagttatgaccatt |
282 |
Q |
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| T |
17377592 |
tgaagcttgcgaagctgattttcgattcgcaacatatattttgcgaaatgcgagacttttacaagttatgtccatt |
17377667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 17383956 - 17384046
Alignment:
| Q |
203 |
actatgaagcttctgaagctgattttcgattttgaacatacattttgctgaatgcgagactcttacaagttatgaccattttccgtactctt |
294 |
Q |
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| T |
17383956 |
actatgaagcttgggaagctgattttcgattcgcaacatatattttgcagaatgcgagacttttgc-agatatgaccatttgccatactctt |
17384046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 7234804 - 7234633
Alignment:
| Q |
3 |
tggacaacaataaaatccacgtccatggcagcaacaacagtggccatcatacccacaatggggaccatggggacaacaaccatgggcaggtccaccttgt |
102 |
Q |
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|||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
7234804 |
tggacagcaatacaatccacgtccatggcagcaacaactgtggccatcatacccacaatggggaccgtggggacaacaaccatgggcagctccaccttgt |
7234705 |
T |
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| Q |
103 |
ccttaccccacatccaattgagttcttccaccatcaaatcgatcccctttggctacaggaactcgtccacca |
174 |
Q |
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| T |
7234704 |
ccttaccccacatccaattgggttcgtccaccatcaaatcgttcccccgtggctacaggaactcgtccacca |
7234633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 17613503 - 17613586
Alignment:
| Q |
5 |
gacaacaataaaatccacgtccatggcagcaacaacagtggccatcatacccacaatggggaccatggggacaacaaccatggg |
88 |
Q |
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|||||||||| |||||||||||||| ||||||||| ||||| |||||||| |||||||||| |||| |||||||||||||| |
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| T |
17613503 |
gacaacaatacaatccacgtccatgccagcaacaaaagtggtcatcatacttccaatggggacggtgggaacaacaaccatggg |
17613586 |
T |
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