View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19550_high_23 (Length: 307)

Name: NF19550_high_23
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19550_high_23
NF19550_high_23
[»] chr8 (1 HSPs)
chr8 (3-292)||(10807212-10807500)


Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 292
Target Start/End: Complemental strand, 10807500 - 10807212
Alignment:
Q  3 cttccgattaattattaatggaaccatttcgttgtcttcattagtagacagttagtatttggtaccatgcattctggggacatgatttttctgttctgtc 102  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10807500 cttccgattaattattaatggacccatttcgttgtcttcattagtagacagttagtatttggtaccatgcattctggggacatgatttt-ctgttctgtc 10807402  T
Q  103 catatttttggcctagtaatatgatgtaattttatatcattatcgtccttaatcacacgaacaagttgctatttgctattcaatatagaagataatgtca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10807401 catatttttggcctagtaatatgatgtaattttatatcattatcgtccttaatcacacgaacaagttgctatttgctattcaatatagaagataatgtca 10807302  T
Q  203 atgaattctgaatctctaccacacacatgtactcatgaaatattttctaattttatgcaaaccagctgaattattatttatagcatagct 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10807301 atgaattctgaatctctaccacacacatgtactcatgaaatattttctaattttatgcaaaccagctgaattattatttatagcatagct 10807212  T

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