View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_high_30 (Length: 238)
Name: NF19550_high_30
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 41296737 - 41296638
Alignment:
| Q |
130 |
cgtgtgagttttaaaatgactcgcttggtgtcggaggtatatgcatcaatggagtggggtgacgtatgccaaccacttcggtgcttgccacaggttctgc |
229 |
Q |
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| T |
41296737 |
cgtgtgagttttaaaatgactcgcttggtgtcggaggtatatgcatcaatggagtggggtgacgtatgccaactacttcggtgcttgccacgtgttctgc |
41296638 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 41296843 - 41296791
Alignment:
| Q |
24 |
agaggttgaatcggaggaagggtttggcggcgaagggagttaccggtcgccgg |
76 |
Q |
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| T |
41296843 |
agaggttgaatcggaggaagggtttggcggcgaagggagctaccggtcgccgg |
41296791 |
T |
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