View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_high_31 (Length: 236)
Name: NF19550_high_31
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 35505694 - 35505487
Alignment:
| Q |
14 |
cagagaactaatatttaattaattaattaattaccctgtcaactttgaatttgtattgaaaagtttctcctggatttatagcacactgagatattgcagc |
113 |
Q |
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| T |
35505694 |
cagagaactaatatttaattaattaattaattaccctgtcaactttgaatttgtattgaaaagtttctcctggatttatagcacattgagatattgcagc |
35505595 |
T |
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| Q |
114 |
agttccatcagcccaaggagttccaaactgcaaacatttttacagtaattaacaacaaaaaatgaatgtaatttttaattataactagacctaagaaact |
213 |
Q |
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| T |
35505594 |
agttccatcagcccaaggagttccaaactgcaaacatttttacagtaattaacaacaaaaaatgaatgtaatttttaattataactagacctaagaaact |
35505495 |
T |
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| Q |
214 |
aagaattt |
221 |
Q |
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|||||||| |
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| T |
35505494 |
aagaattt |
35505487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 151
Target Start/End: Complemental strand, 35535438 - 35535321
Alignment:
| Q |
34 |
aattaattaattaccctgtcaactttgaatttgtattgaaaagtttctcctggatttatagcacactgagatattgcagcagttccatcagcccaaggag |
133 |
Q |
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| T |
35535438 |
aattcattaatcaccttgtcaacttcgaatttgtattgaaaagtttctcctggatttatagcacactgagatattgcagcagttccatcagcccaaggag |
35535339 |
T |
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| Q |
134 |
ttccaaactgcaaacatt |
151 |
Q |
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| T |
35535338 |
ttccacgctgcaaacatt |
35535321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 35523141 - 35523034
Alignment:
| Q |
32 |
ttaattaattaattaccctgtcaactttgaatttgtattgaaaagtttctcctggatttatagcacactgagatattgcagcagttccatcagcccaagg |
131 |
Q |
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||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
35523141 |
ttaattaattaattaccctgtcaacaatgaatctgtaatgaaaagtttctcctggatttatagcacactgagagattgctgcagttccatcagcccaagg |
35523042 |
T |
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| Q |
132 |
agttccaa |
139 |
Q |
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|||||||| |
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| T |
35523041 |
agttccaa |
35523034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 1834439 - 1834487
Alignment:
| Q |
123 |
agcccaaggagttccaaactgcaaacatttttacagtaattaacaacaa |
171 |
Q |
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| T |
1834439 |
agcccaaggagtttcaaactgcaaacatttttacagtaattaacaacaa |
1834487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 1833859 - 1833899
Alignment:
| Q |
90 |
tatagcacactgagatattgcagcagttccatcagcccaag |
130 |
Q |
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| T |
1833859 |
tatagcacaccgagatattgcagcagttccatcagcccaag |
1833899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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