View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19550_high_7 (Length: 485)

Name: NF19550_high_7
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19550_high_7
NF19550_high_7
[»] chr6 (7 HSPs)
chr6 (1-468)||(34770867-34771334)
chr6 (1-153)||(34781216-34781365)
chr6 (1-57)||(11549500-11549556)
chr6 (189-257)||(34795285-34795353)
chr6 (191-257)||(34780505-34780570)
chr6 (273-367)||(34795418-34795512)
chr6 (100-147)||(34777675-34777720)


Alignment Details
Target: chr6 (Bit Score: 464; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 34770867 - 34771334
Alignment:
Q  1 acactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagtatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770867 acactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagtatat 34770966  T
Q  101 gatggaatgcattctactatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatctataataacaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770967 gatggaatgcattctactatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatctataataacaata 34771066  T
Q  201 ataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagagtctcagaagta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771067 ataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagagtctcagaagta 34771166  T
Q  301 actctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagtagcattcattca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771167 actctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagtagcattcattca 34771266  T
Q  401 ttatttatttacttttgtttctctaataccattagaaaatgaaagagagagaatctcgcttcctactt 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34771267 ttatttatttacttttgtttctctaataccattagaaaatgaaagaaagagaatctcgcttcctactt 34771334  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 34781216 - 34781365
Alignment:
Q  1 acactactttttcaaataaaa-gatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagtata 99  Q
    ||||||||| ||||||||||| ||| || |||||||||||||||  ||||||||||||||||||  |  |||| |||||||||||||||||||| |||||    
T  34781216 acactacttgttcaaataaaaagattagagataaaatagtaattttaaaattaagatgtttcat--ggaggaaagaaaaataataagagatgatggtata 34781313  T
Q  100 tgatggaatgcattctactatataatccattttattccattcaatttttacaaa 153  Q
     |||| |||||||| || ||||  ||||||||||||||||||||||||||||||    
T  34781314 cgatgaaatgcattatattata--atccattttattccattcaatttttacaaa 34781365  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11549500 - 11549556
Alignment:
Q  1 acactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatg 57  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11549500 acactactttttcaaataaaagatcagggatagaatagtaattacaaaattaagatg 11549556  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 34795285 - 34795353
Alignment:
Q  189 ataataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact 257  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||| ||||    
T  34795285 ataataacaataataaatagagccaacgaagtttgactcaattgataaaaaataacaaaaaatttaact 34795353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 34780505 - 34780570
Alignment:
Q  191 aataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact 257  Q
    |||||||| ||||||||||  || ||||||| || ||||||||||||||||||||||||||||||||    
T  34780505 aataacaaaaataaaaagaatta-cgaagttcgactcaattgataaaaaataactaaaaattcaact 34780570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 367
Target Start/End: Original strand, 34795418 - 34795512
Alignment:
Q  273 aatacatctttagagagtctcagaagtaactctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattg 367  Q
    ||||| ||||||||||| ||   | ||| |||||| || ||||||||||||||||||| |||| ||||||| |||  ||||||||||||||||||    
T  34795418 aatacctctttagagagactataaggtagctctaactcaattaagttgcgaaatccgactcatttaaacttttttgtgccaaataagtagcattg 34795512  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 34777675 - 34777720
Alignment:
Q  100 tgatggaatgcattctactatataatccattttattccattcaatttt 147  Q
    ||||||||| |||||||||||   ||||||||||||||||||||||||    
T  34777675 tgatggaatccattctactatc--atccattttattccattcaatttt 34777720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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