View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_high_8 (Length: 483)
Name: NF19550_high_8
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 25 - 466
Target Start/End: Complemental strand, 4621539 - 4621098
Alignment:
| Q |
25 |
cgcatacacaatatgcttctattcttttattcatttgaaattgtttgaaaacattatttttgtaactaaatcaagatttttgattcatttagttacatga |
124 |
Q |
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| T |
4621539 |
cgcatacgcaatatgcttctattcttttattcatttgaaattgtttgaaaacattattttggtaactaaatcaagatttttgattcatatagttacatga |
4621440 |
T |
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| Q |
125 |
agcaagttagtcactgcgggatgagtaatatgtctgcatgatggtgagtaccaggagcatagcagctgccacaattcctatgaatttccacacatttggt |
224 |
Q |
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| T |
4621439 |
agcaagttagtcactgcgggatgagtaatatgtctgcatgatggtgagtaccaggagcatagcagctgccacaattcctatgaatttccacacattaggt |
4621340 |
T |
|
| Q |
225 |
atatggtcgcgtatcaaaatattataccagtttcgaacgtagtacataaggatctcaaaaactcgcctacattgatgccatgttctaataggtaattttt |
324 |
Q |
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| T |
4621339 |
atatggtcgcgtatcaaaatattataccagtttcgaacgtagtacataaggatctcaaaaactcgcctacattgatgccatgttctaataggtaattttt |
4621240 |
T |
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| Q |
325 |
gcaccaccttggtgactttcattcccttgtagtcatacacattcatctttgcacaaatttcactaaaactcaaatccatatgttcagctccattcgaaat |
424 |
Q |
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| T |
4621239 |
gcaccaccttggtgactttcattcccttgtagtcatacacattcatcttcgcacaaatttcactaaaactcaaatccatatgttcagctccattcgaaat |
4621140 |
T |
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| Q |
425 |
tgtgcgaaatagtgccaacaaatcttcgttactcttgttcat |
466 |
Q |
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| T |
4621139 |
tgtgcgaaatagtgccaacaaatcttcgttactcttgttcat |
4621098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 131 - 470
Target Start/End: Complemental strand, 4591901 - 4591562
Alignment:
| Q |
131 |
ttagtcactgcgggatgagtaatatgtctgcatgatggtgagtaccaggagcatagcagctgccacaattcctatgaatttccacacatttggtatatgg |
230 |
Q |
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|||| |||||||||||||||||||||| |||| |||||||| |||| ||||| ||||||||| |||||||||||||||||||| || | ||||||||| |
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| T |
4591901 |
ttagccactgcgggatgagtaatatgtttgcactatggtgagaaccacgagcaaagcagctgcgacaattcctatgaatttccaaaccgtaggtatatgg |
4591802 |
T |
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| Q |
231 |
tcgcgtatcaaaatattataccagtttcgaacgtagtacataaggatctcaaaaactcgcctacattgatgccatgttctaataggtaatttttgcacca |
330 |
Q |
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| T |
4591801 |
tcacgtatcaaaactttgtaccaatttcgcccatagttcacaaaattttcactaattcgcctacattgatgccaagcacgtataggcaattttcgcaaca |
4591702 |
T |
|
| Q |
331 |
ccttggtgactttcattcccttgtagtcatacacattcatctttgcacaaatttcactaaaactcaaatccatatgttcagctccattcgaaattgtgcg |
430 |
Q |
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| T |
4591701 |
cttttgtgactttcatccccatgtagtcatacacattcaaccttgcacaaatctcgctataactcaaatccatttgctcggctcctttggcaatcgtttg |
4591602 |
T |
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| Q |
431 |
aaatagtgccaacaaatcttcgttactcttgttcatctca |
470 |
Q |
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| T |
4591601 |
aaataatatcaacaaatcttcattgctcttgttcaactca |
4591562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 339 - 414
Target Start/End: Complemental strand, 4555376 - 4555301
Alignment:
| Q |
339 |
actttcattcccttgtagtcatacacattcatctttgcacaaatttcactaaaactcaaatccatatgttcagctc |
414 |
Q |
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|||||||| |||||| ||||||||||||||| ||||| |||||| |||||| ||||||||||||| || ||||||| |
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| T |
4555376 |
actttcatccccttgcagtcatacacattcaactttgtacaaatctcactataactcaaatccatgtgctcagctc |
4555301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 4555578 - 4555447
Alignment:
| Q |
136 |
cactgcgggatgagtaatatgtctgcatgatggtgagtaccaggagcatagcagctgccacaattcctatgaatttccacacatttggtatatggtcgcg |
235 |
Q |
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| T |
4555578 |
cactacgggaggagcaatatgtttgcatgatagtaaggacgaggagcacaacaactgcgattattcctacgaatt-ccaaaccgtaggtatatgctcacg |
4555480 |
T |
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| Q |
236 |
tatcaaaatattataccagtttcgaacgtagta |
268 |
Q |
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| T |
4555479 |
tatcaaaatattgtaccagtttcgcccgtagta |
4555447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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