View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19550_high_9 (Length: 476)

Name: NF19550_high_9
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19550_high_9
NF19550_high_9
[»] chr2 (17 HSPs)
chr2 (18-461)||(6751879-6752320)
chr2 (161-281)||(23395921-23396039)
chr2 (148-281)||(11226121-11226252)
chr2 (178-284)||(41069655-41069759)
chr2 (164-316)||(31750455-31750603)
chr2 (206-269)||(39729017-39729080)
chr2 (181-270)||(32832589-32832676)
chr2 (182-284)||(19037039-19037128)
chr2 (168-235)||(3496809-3496874)
chr2 (206-265)||(28640141-28640200)
chr2 (206-265)||(40204728-40204787)
chr2 (173-283)||(15141880-15141977)
chr2 (206-254)||(36562752-36562800)
chr2 (206-265)||(13477690-13477749)
chr2 (210-261)||(38529885-38529936)
chr2 (206-251)||(8209324-8209369)
chr2 (212-265)||(33433419-33433472)
[»] chr5 (17 HSPs)
chr5 (148-317)||(34928769-34928936)
chr5 (215-283)||(14151925-14151993)
chr5 (210-282)||(22658862-22658934)
chr5 (206-265)||(19824615-19824674)
chr5 (163-235)||(37515593-37515663)
chr5 (206-261)||(33922867-33922922)
chr5 (214-265)||(14281810-14281862)
chr5 (204-255)||(18623597-18623648)
chr5 (212-316)||(27554873-27554977)
chr5 (206-265)||(33953159-33953218)
chr5 (212-265)||(22029851-22029904)
chr5 (206-262)||(9956638-9956694)
chr5 (212-265)||(3622203-3622256)
chr5 (219-283)||(14139407-14139469)
chr5 (247-280)||(22473597-22473630)
chr5 (206-263)||(42321091-42321148)
chr5 (214-266)||(22653519-22653571)
[»] chr3 (14 HSPs)
chr3 (164-283)||(10688599-10688716)
chr3 (212-284)||(47548873-47548945)
chr3 (168-316)||(4037136-4037271)
chr3 (182-269)||(39485467-39485554)
chr3 (161-235)||(49279477-49279549)
chr3 (206-284)||(50700045-50700121)
chr3 (168-235)||(11233501-11233566)
chr3 (206-283)||(46348375-46348452)
chr3 (168-281)||(39972987-39973087)
chr3 (207-265)||(34305819-34305877)
chr3 (244-284)||(39350775-39350815)
chr3 (180-235)||(39994198-39994251)
chr3 (224-260)||(132151-132187)
chr3 (208-264)||(42466959-42467015)
[»] chr8 (16 HSPs)
chr8 (178-282)||(4834954-4835056)
chr8 (206-266)||(20896187-20896247)
chr8 (182-269)||(35793178-35793263)
chr8 (206-265)||(44132874-44132933)
chr8 (163-235)||(33938623-33938693)
chr8 (206-265)||(1898098-1898157)
chr8 (206-269)||(22786576-22786639)
chr8 (178-242)||(41474302-41474364)
chr8 (212-264)||(33445807-33445858)
chr8 (244-283)||(16499803-16499842)
chr8 (244-283)||(16508728-16508767)
chr8 (206-248)||(12964361-12964403)
chr8 (212-265)||(35910617-35910668)
chr8 (206-283)||(6261081-6261158)
chr8 (217-265)||(10968543-10968591)
chr8 (214-266)||(44077744-44077796)
[»] chr4 (23 HSPs)
chr4 (173-284)||(29544144-29544253)
chr4 (178-284)||(46079322-46079426)
chr4 (161-283)||(52673181-52673301)
chr4 (181-264)||(29724351-29724432)
chr4 (161-268)||(29693184-29693287)
chr4 (178-269)||(53406486-53406575)
chr4 (212-283)||(44015395-44015466)
chr4 (206-266)||(5052119-5052179)
chr4 (210-265)||(19473052-19473107)
chr4 (205-263)||(31455897-31455955)
chr4 (206-264)||(50041816-50041874)
chr4 (206-264)||(50049038-50049096)
chr4 (206-269)||(23332136-23332199)
chr4 (206-269)||(40202245-40202308)
chr4 (212-265)||(52198385-52198438)
chr4 (213-265)||(36498600-36498652)
chr4 (215-254)||(1208706-1208745)
chr4 (244-283)||(9116228-9116267)
chr4 (210-265)||(31203355-31203410)
chr4 (206-283)||(11077844-11077921)
chr4 (206-255)||(30643603-30643652)
chr4 (212-269)||(51853503-51853560)
chr4 (212-265)||(53176876-53176929)
[»] chr1 (26 HSPs)
chr1 (178-283)||(48914968-48915071)
chr1 (178-283)||(48915359-48915462)
chr1 (161-283)||(19456293-19456413)
chr1 (178-283)||(48915160-48915261)
chr1 (161-282)||(26478550-26478669)
chr1 (173-283)||(50539711-50539819)
chr1 (206-281)||(3950280-3950355)
chr1 (161-283)||(27907691-27907800)
chr1 (161-281)||(24671144-24671262)
chr1 (166-265)||(19431391-19431488)
chr1 (161-235)||(27032330-27032402)
chr1 (161-314)||(48843364-48843504)
chr1 (212-265)||(44448499-44448552)
chr1 (180-259)||(5398029-5398106)
chr1 (208-264)||(49177428-49177483)
chr1 (165-235)||(51748544-51748612)
chr1 (204-254)||(15106237-15106287)
chr1 (206-259)||(46325597-46325650)
chr1 (218-265)||(4213841-4213888)
chr1 (206-265)||(11872189-11872248)
chr1 (206-269)||(17923857-17923920)
chr1 (212-259)||(46325450-46325497)
chr1 (204-234)||(46284444-46284474)
chr1 (244-281)||(27032295-27032332)
chr1 (217-266)||(34430053-34430102)
chr1 (210-259)||(49315741-49315790)
[»] chr7 (17 HSPs)
chr7 (161-279)||(32279281-32279395)
chr7 (178-284)||(2628418-2628522)
chr7 (168-316)||(46425278-46425413)
chr7 (164-282)||(9488753-9488870)
chr7 (167-283)||(18867921-18868024)
chr7 (168-235)||(16876747-16876812)
chr7 (168-235)||(23185933-23185998)
chr7 (186-316)||(34328118-34328235)
chr7 (206-282)||(40591046-40591122)
chr7 (212-270)||(37685186-37685244)
chr7 (212-266)||(685000-685054)
chr7 (215-268)||(11369053-11369106)
chr7 (220-265)||(33957482-33957527)
chr7 (180-265)||(42971644-42971727)
chr7 (210-265)||(19495145-19495200)
chr7 (212-255)||(43368497-43368540)
chr7 (212-265)||(32204779-32204832)
[»] chr6 (17 HSPs)
chr6 (168-316)||(9928256-9928391)
chr6 (168-284)||(22469694-22469797)
chr6 (164-277)||(9549359-9549472)
chr6 (212-265)||(457686-457739)
chr6 (206-265)||(8585733-8585792)
chr6 (206-265)||(24226089-24226148)
chr6 (214-265)||(26847179-26847230)
chr6 (206-281)||(28963575-28963650)
chr6 (168-235)||(7506627-7506692)
chr6 (206-265)||(512774-512833)
chr6 (208-265)||(167183-167240)
chr6 (212-265)||(6793531-6793584)
chr6 (208-265)||(28729980-28730037)
chr6 (206-270)||(3037370-3037434)
chr6 (206-263)||(6139349-6139406)
chr6 (244-281)||(29393747-29393784)
chr6 (244-284)||(31743916-31743956)
[»] scaffold0085 (1 HSPs)
scaffold0085 (212-265)||(31608-31661)
[»] scaffold0176 (2 HSPs)
scaffold0176 (161-235)||(15079-15151)
scaffold0176 (244-284)||(15149-15189)


Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 6752320 - 6751879
Alignment:
Q  18 tattctctcgctaatcaatttcagcatcaccagctactacatacactaccattctagtatttccttcatgtttctgttttggtattagaacatgtcttta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6752320 tattctctcgctaatcaatttcagcatcaccagctactacatacactaccattctagtatttccttcatgtttctgttttggtagtagaacatgtcttta 6752221  T
Q  118 gagattatttgtgtgtattgttgtgtaattggtagcacttggttgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatct 217  Q
    || ||| ||||||||||||| ||||||||||||||||||| | |||||||| || || | ||||||||||||||||||||||| | | |||||  |||||    
T  6752220 gatattgtttgtgtgtattgctgtgtaattggtagcacttaggtgtcattgatacctctgtgtctatctctctcttaacaacttactttctct--catct 6752123  T
Q  218 aaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaatggtacnnnnnnnctatggcaccaaagtatttccca 317  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||       |||||||||| |||||||||||     
T  6752122 aaataatttattttaatcattcatttatcattctctctcatctaaaatgaacttatgtcatcaatggtaccaaaaaactatggcacccaagtatttccct 6752023  T
Q  318 gtggattctatctatgttttgtagagcgtgtatttaaaggggaaacttgttcaacaaggttcatgcttaacatcgataatgacaactttcgatgtcttca 417  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6752022 gtgtaatctatctatgttttgtagagcgtgtatttaaaggggaaacttgttaaacaaggttcatgcttaacatcgataatgacaactttcgatgtcttca 6751923  T
Q  418 tcaattaatttacacgtatataacttgaatcacatatatgtttg 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6751922 tcaattaatttacacgtatataacttgaatcacatatatgtttg 6751879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 23395921 - 23396039
Alignment:
Q  161 tgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatct 260  Q
    |||||||||||  ||| ||||||||||||||||||||||||| |  |||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23395921 tgtcattggtacatttgtgtctatctctctcttaacaactcatt--ctctatcatctaaataatttattttaatcattcatttatcattctctctcatct 23396018  T
Q  261 aaaatgaacctatgtcaccaa 281  Q
    |||||||||||||||||||||    
T  23396019 aaaatgaacctatgtcaccaa 23396039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 148 - 281
Target Start/End: Original strand, 11226121 - 11226252
Alignment:
Q  148 ggtagcacttggttgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatca 247  Q
    |||||||||||| || |||||||| |||| ||||||||||||||||||||||||| | |||||  ||||||||||||||||||||||| ||||||  |||    
T  11226121 ggtagcacttgggtgccattggtacctttgtgtctatctctctcttaacaactcattctctct--catctaaataatttattttaatcattcattcgtca 11226218  T
Q  248 ttctctctcatctaaaatgaacctatgtcaccaa 281  Q
    ||||||||||| ||||||||||||||||||||||    
T  11226219 ttctctctcatttaaaatgaacctatgtcaccaa 11226252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 41069759 - 41069655
Alignment:
Q  178 tgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtca 277  Q
    ||||||||| ||||||||||| ||| | |||||  ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  41069759 tgtctatctgtctcttaacaattcattctctct--catctaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacctatgtca 41069662  T
Q  278 ccaatgg 284  Q
    |||||||    
T  41069661 ccaatgg 41069655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 164 - 316
Target Start/End: Original strand, 31750455 - 31750603
Alignment:
Q  164 cattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaa 263  Q
    ||||| || |||| ||||||||||||||||||||| ||| | |||||  |||||||||  |||||||||||| |||||| |||||||||| | |||||||    
T  31750455 cattgatacctttgtgtctatctctctcttaacaattcattttctct--catctaaat--tttattttaatcattcattcatcattctctgtgatctaaa 31750550  T
Q  264 atgaacctatgtcaccaatggtacnnnnnnnctatggcaccaaagtatttccc 316  Q
    |||||  |||||||||||||| ||       |||||||||| |||||||||||    
T  31750551 atgaatatatgtcaccaatggcaccaacaaactatggcacctaagtatttccc 31750603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 39729017 - 39729080
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaac 269  Q
    ||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  39729017 tctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaatgaac 39729080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 32832676 - 32832589
Alignment:
Q  181 ctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacc 270  Q
    |||||||||||||||| | ||| | |||||  ||||||||||||||||||||||| |||||  | |||||||||||||||||||||||||    
T  32832676 ctatctctctcttaaccattcattctctct--catctaaataatttattttaatcattcatccaacattctctctcatctaaaatgaacc 32832589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 19037128 - 19037039
Alignment:
Q  182 tatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaa 281  Q
    ||||||||||||||||||||| | |||||  |||||||||||||||||||||||           ||||||| |||||||||||||||||||||||||||    
T  19037128 tatctctctcttaacaactcattctctct--catctaaataatttattttaatc-----------attctctttcatctaaaatgaacctatgtcaccaa 19037042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 3496874 - 3496809
Alignment:
Q  168 ggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatc 235  Q
    |||| |||| |||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||    
T  3496874 ggtaactttgtgtctatctctctcttaacaactca--ttctctctcatctaaataatttattttaatc 3496809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 28640200 - 28640141
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||||| ||| |||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  28640200 tctcttttatcaaaataatttattttaatcattcatctatcattctctttcatctaaaat 28640141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 40204787 - 40204728
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||||||| |||||||||||||||||||  ||||| |||||||||||||||| ||||||    
T  40204787 tctctttcacctaaataatttattttaataattcatctatcattctctctcatgtaaaat 40204728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 15141880 - 15141977
Alignment:
Q  173 ctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaaccta 272  Q
    |||| ||||||||||||| ||||||||| | | |||||  |||||||||||||||||||||||           ||||||| ||||||||||||||||||    
T  15141880 ctttgtgtctatctctcttttaacaacttattctctct--catctaaataatttattttaatc-----------attctctttcatctaaaatgaaccta 15141966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 36562800 - 36562752
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctc 254  Q
    ||||| ||||||||||||||||||||| || |||||| |||||||||||    
T  36562800 tctctctcatctaaataatttattttactcattcattcatcattctctc 36562752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 13477749 - 13477690
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| |||| ||||||| ||||||||||| |||||| |||||||||||| ||| |||||    
T  13477749 tctctctcatttaaataaattattttaatcattcattcatcattctctcttatccaaaat 13477690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 38529936 - 38529885
Alignment:
Q  210 tttcatctaaataatttattttaatccttcatttatcattctctctcatcta 261  Q
    |||||||||||||||||||||||||| |||||  || ||| |||||||||||    
T  38529936 tttcatctaaataatttattttaatcattcataaattattatctctcatcta 38529885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 8209324 - 8209369
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattct 251  Q
    ||||| ||||| |||||||||||||||||| |||||||| ||||||    
T  8209324 tctctctcatcaaaataatttattttaatcattcatttaccattct 8209369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 33433472 - 33433419
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    |||||||||||||||||||||||| |||||| ||  |||||||| ||| |||||    
T  33433472 tcatctaaataatttattttaatcattcattcatttttctctcttatcaaaaat 33433419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 148 - 317
Target Start/End: Original strand, 34928769 - 34928936
Alignment:
Q  148 ggtagcacttggttgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatca 247  Q
    ||||||| |||| ||||||||||| |||| | ||||||||  ||||||||||| | | |||||||||||||||||||||||||||||| |||||||||||    
T  34928769 ggtagcatttggatgtcattggtacctttgtatctatctc--tcttaacaacttattctctctttcatctaaataatttattttaatcattcatttatca 34928866  T
Q  248 ttctctctcatctaaaatgaacctatgtcaccaatggtacnnnnnnnctatggcaccaaagtatttccca 317  Q
    |||||||||||||||||||||| ||||||| |||||  ||       |||||||||| ||||||||||||    
T  34928867 ttctctctcatctaaaatgaacatatgtcatcaatgacactaaaaaactatggcacccaagtatttccca 34928936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 14151993 - 14151925
Alignment:
Q  215 tctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaatg 283  Q
    ||||||||||||||||||||| |||||| || ||| ||||||||||||||||||||||||||| |||||    
T  14151993 tctaaataatttattttaatcattcattcattattatctctcatctaaaatgaacctatgtcatcaatg 14151925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 22658862 - 22658934
Alignment:
Q  210 tttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaat 282  Q
    |||||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||||| ||||| ||||||    
T  22658862 tttcatttaaataatttattttaatcattcattcatcattctctttcatctaaaatgaacttatgttaccaat 22658934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 19824615 - 19824674
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| |||||||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  19824615 tctctctcatctaaataatttattttaatcattcatctaacattctctctcatctaaaat 19824674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 37515663 - 37515593
Alignment:
Q  163 tcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatc 235  Q
    |||| |||| |||| ||||||||||||||||||||||||| ||  ||| ||||||||||||||||||||||||    
T  37515663 tcataggtaactttgtgtctatctctctcttaacaactcatta--tctatcatctaaataatttattttaatc 37515593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 33922922 - 33922867
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatcta 261  Q
    ||||| ||||||| || ||||||||||||| |||||||||||||||||||||||||    
T  33922922 tctctctcatctacattatttattttaatcattcatttatcattctctctcatcta 33922867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 14281862 - 14281810
Alignment:
Q  214 atctaaataatttattttaatcc-ttcatttatcattctctctcatctaaaat 265  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||||||||||    
T  14281862 atctaaataatttattttaatacattcatctatcattctctctcatctaaaat 14281810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 18623648 - 18623597
Alignment:
Q  204 tatctctttcatctaaataatttattttaatccttcatttatcattctctct 255  Q
    ||||||| | |||||||||||||||||||||| ||||| |||||||||||||    
T  18623648 tatctctcttatctaaataatttattttaatcattcatctatcattctctct 18623597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 27554977 - 27554873
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaatggtacnnnnnnnctatggcaccaaagtat 311  Q
    ||||||||||||| |||||||||  || ||| |||||| ||||||||||||||| ||| ||| ||| |||||| |        |||||||||||||||||    
T  27554977 tcatctaaataatctattttaattatttattcatcattttctctcatctaaaataaacttatatcatcaatggcagtaaaaaactatggcaccaaagtat 27554878  T
Q  312 ttccc 316  Q
    |||||    
T  27554877 ttccc 27554873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 33953159 - 33953218
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| |||||||||||||||||||||||  |||||  | ||||||||||||||||||||    
T  33953159 tctctctcatctaaataatttattttaattattcatccaccattctctctcatctaaaat 33953218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 22029904 - 22029851
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| |||||||||||||||||| |||||  | ||||||||||||||||||||    
T  22029904 tcatccaaataatttattttaatcattcatccaacattctctctcatctaaaat 22029851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 9956638 - 9956694
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaa 262  Q
    ||||| ||||| ||||||||||||||||||  |||||||||||  ||||||||||||    
T  9956638 tctctctcatcaaaataatttattttaatcactcatttatcatcttctctcatctaa 9956694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 3622256 - 3622203
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| ||||||||||||||||||  || | |||||||||| ||||||||||||    
T  3622256 tcatcaaaataatttattttaatcactcgtatatcattctcactcatctaaaat 3622203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 14139407 - 14139469
Alignment:
Q  219 aataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaatg 283  Q
    ||||||||||||||||| || |||||| ||  ||||||||||||||| ||||||| ||| |||||    
T  14139407 aataatttattttaatcatttatttattat--tctctcatctaaaataaacctatatcatcaatg 14139469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 22473597 - 22473630
Alignment:
Q  247 attctctctcatctaaaatgaacctatgtcacca 280  Q
    ||||||||||||||||||||||| ||||||||||    
T  22473597 attctctctcatctaaaatgaacatatgtcacca 22473630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 42321091 - 42321148
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaa 263  Q
    ||||| ||||||||||||| |||||||| | ||||| || ||||||||||||| ||||    
T  42321091 tctctctcatctaaataatatattttaaacattcatctaacattctctctcatataaa 42321148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 22653519 - 22653571
Alignment:
Q  214 atctaaataatttattttaatccttcatttatcattctctctcatctaaaatg 266  Q
    ||||||||||| |||||||||| |||||  || ||||| ||||||||||||||    
T  22653519 atctaaataatctattttaatcattcatccattattctttctcatctaaaatg 22653571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 164 - 283
Target Start/End: Original strand, 10688599 - 10688716
Alignment:
Q  164 cattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaa 263  Q
    |||||||| |||| ||||||||||||||||||||||||| | |||||  ||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  10688599 cattggtacctttgtgtctatctctctcttaacaactcattctctct--catctaaataatttattttaatcattcattcatcattctctctcatctaaa 10688696  T
Q  264 atgaacctatgtcaccaatg 283  Q
    |||||| ||||||| |||||    
T  10688697 atgaacttatgtcatcaatg 10688716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 47548873 - 47548945
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaatgg 284  Q
    |||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||| ||||||||    
T  47548873 tcatctaaataatttattttaatcatccattcaacattctctctcatctaaaatgaacctatgttaccaatgg 47548945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 168 - 316
Target Start/End: Original strand, 4037136 - 4037271
Alignment:
Q  168 ggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatga 267  Q
    |||| |||| |||||||||||||||||||||||||   ||||| |||||||||||||||||||||           |||||||||| |||||||||||||    
T  4037136 ggtaactttgtgtctatctctctcttaacaactca--ttctctctcatctaaataatttatttta-----------atcattctctttcatctaaaatga 4037222  T
Q  268 acctatgtcaccaatggtacnnnnnnnctatggcaccaaagtatttccc 316  Q
    ||||||||||||||||| ||       |||||||||| |||||||||||    
T  4037223 acctatgtcaccaatggcaccaaaaaactatggcacccaagtatttccc 4037271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 39485554 - 39485467
Alignment:
Q  182 tatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaac 269  Q
    ||||||||||| ||| | ||| | ||||| |||||||||||||||||||||||| |||||  | | ||||||||||||||||||||||    
T  39485554 tatctctctctaaaccattcattctctctctcatctaaataatttattttaatcattcatccaaccttctctctcatctaaaatgaac 39485467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 49279477 - 49279549
Alignment:
Q  161 tgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatc 235  Q
    |||||| |||| |||| |||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||    
T  49279477 tgtcataggtaactttgtgtctatctctctcttaacaactca--ttctctctcatctaaataatttattttaatc 49279549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 50700045 - 50700121
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaatgg 284  Q
    ||||| || ||||||||||||||||||||| || ||| |||||||||  ||||||||||||||| ||||||||||||||    
T  50700045 tctctctcgtctaaataatttattttaatcatttattcatcattctc--tcatctaaaatgaacttatgtcaccaatgg 50700121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 11233501 - 11233566
Alignment:
Q  168 ggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatc 235  Q
    |||| |||| |||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||    
T  11233501 ggtaactttgtgtctatctctctcttaacaactca--ttctctctcatctaaataatttattttaatc 11233566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 46348452 - 46348375
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaatg 283  Q
    ||||| |||| |||||| ||||| |||||  |||||| ||||||||||||||||||||||||||| || ||| |||||    
T  46348452 tctctctcatttaaatagtttatcttaataattcattcatcattctctctcatctaaaatgaaccaatatcatcaatg 46348375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 281
Target Start/End: Original strand, 39972987 - 39973087
Alignment:
Q  168 ggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatga 267  Q
    |||| |||| ||||||||||||||||||||||||| | |||||  |||| ||||||||||||||||||           ||||||| |||||||||||||    
T  39972987 ggtaactttgtgtctatctctctcttaacaactcattctctct--catcaaaataatttattttaatc-----------attctctttcatctaaaatga 39973073  T
Q  268 acctatgtcaccaa 281  Q
    |||||| |||||||    
T  39973074 acctatatcaccaa 39973087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 34305819 - 34305877
Alignment:
Q  207 ctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    |||| ||||| ||||||| ||||||||||  |||| |||||||||||||||||||||||    
T  34305819 ctctctcatcaaaataatatattttaatcactcatctatcattctctctcatctaaaat 34305877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 39350815 - 39350775
Alignment:
Q  244 atcattctctctcatctaaaatgaacctatgtcaccaatgg 284  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  39350815 atcattctctttcatctaaaatgaacctatggcaccaatgg 39350775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 39994198 - 39994251
Alignment:
Q  180 tctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatc 235  Q
    ||||||||||| ||||||||||| | |||||  |||||||||||||||||||||||    
T  39994198 tctatctctcttttaacaactcattctctct--catctaaataatttattttaatc 39994251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 132151 - 132187
Alignment:
Q  224 tttattttaatccttcatttatcattctctctcatct 260  Q
    |||||||||||| |||||| |||||||||||||||||    
T  132151 tttattttaatcattcattcatcattctctctcatct 132187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 42467015 - 42466959
Alignment:
Q  208 tctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaa 264  Q
    |||||| ||||||||||||||||||||  |||||| |||||||| | |||| |||||    
T  42467015 tctttcgtctaaataatttattttaattattcattcatcattctttttcatgtaaaa 42466959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 4835056 - 4834954
Alignment:
Q  178 tgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtca 277  Q
    ||||||||| ||||||||||||||| |  |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  4835056 tgtctatctttctcttaacaactcatt--ctctttcacctaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacctatgtca 4834959  T
Q  278 ccaat 282  Q
    |||||    
T  4834958 ccaat 4834954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 20896247 - 20896187
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatg 266  Q
    ||||| |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  20896247 tctctctcatctaaataatttattttaatcattcatatatcattatctctcatctaaaatg 20896187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 35793178 - 35793263
Alignment:
Q  182 tatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaac 269  Q
    ||||||||||||||| ||||| |||||||  ||| ||||||||||||||||||  ||||||| ||||| || ||||||| ||||||||    
T  35793178 tatctctctcttaactactcattatctct--catttaaataatttattttaattattcatttttcattgtcactcatctcaaatgaac 35793263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 44132933 - 44132874
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| ||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  44132933 tctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaat 44132874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 33938693 - 33938623
Alignment:
Q  163 tcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatc 235  Q
    |||| |||| |||| ||||||||||||||||||||| ||| | |||||  |||||||||||||||||||||||    
T  33938693 tcataggtaactttgtgtctatctctctcttaacaattcattctctct--catctaaataatttattttaatc 33938623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 1898157 - 1898098
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||||| ||| ||||||||||||||||||  | || |||||||||||||||||||||||    
T  1898157 tctcttttatcaaaataatttattttaatcagttatatatcattctctctcatctaaaat 1898098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 22786576 - 22786639
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaac 269  Q
    |||||||||| ||||||||||| ||||||  || |||||||||||| | |||||||||||||||    
T  22786576 tctctttcatttaaataatttactttaattatttatttatcattctttttcatctaaaatgaac 22786639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 41474364 - 41474302
Alignment:
Q  178 tgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatt 242  Q
    ||||||| ||||||||||||||| | ||||||||  || ||||||||||||||||||| ||||||    
T  41474364 tgtctatttctctcttaacaacttattatctctt--atttaaataatttattttaatcattcatt 41474302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 33445858 - 33445807
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaa 264  Q
    ||||||||||||||||||| |||| ||| |||||||||||| |||||||||||    
T  33445858 tcatctaaataatttattt-aatcattcttttatcattctcactcatctaaaa 33445807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 16499842 - 16499803
Alignment:
Q  244 atcattctctctcatctaaaatgaacctatgtcaccaatg 283  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  16499842 atcattctctctcatataaaatgaacctatatcaccaatg 16499803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 16508767 - 16508728
Alignment:
Q  244 atcattctctctcatctaaaatgaacctatgtcaccaatg 283  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  16508767 atcattctctctcatataaaatgaacctatatcaccaatg 16508728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 12964361 - 12964403
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcat 248  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||    
T  12964361 tctctttcatcaaaataatttattttaatcattcatatatcat 12964403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 35910617 - 35910668
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| |||| ||||||||||||| |||||||||||  ||||||||||||||||    
T  35910617 tcatcaaaatgatttattttaatcattcatttatca--ctctctcatctaaaat 35910668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 6261081 - 6261158
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaatg 283  Q
    ||||| ||||||||||||||||||| |||  |||||  |  ||||| |||||||||||||| ||  ||||||||||||    
T  6261081 tctctctcatctaaataatttatttgaattattcatcaactattctttctcatctaaaatgtactaatgtcaccaatg 6261158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 10968591 - 10968543
Alignment:
Q  217 taaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||||||||||||||||| ||||| ||  ||| |||||||||||||||    
T  10968591 taaataatttattttaatctttcatctaatattttctctcatctaaaat 10968543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 44077796 - 44077744
Alignment:
Q  214 atctaaataatttattttaatccttcatttatcattctctctcatctaaaatg 266  Q
    |||||||||||||||||||||  || ||| |||| ||||| ||||||||||||    
T  44077796 atctaaataatttattttaattatttattcatcactctctttcatctaaaatg 44077744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 173 - 284
Target Start/End: Complemental strand, 29544253 - 29544144
Alignment:
Q  173 ctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaaccta 272  Q
    |||| ||||||||||||| ||||||||||| |  |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||    
T  29544253 ctttgtgtctatctctctattaacaactcatt--ctctatcatctaaataatttattttaatcattcatttatcattttctctcatctaaaatgaacata 29544156  T
Q  273 tgtcaccaatgg 284  Q
    ||||||||||||    
T  29544155 tgtcaccaatgg 29544144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 46079426 - 46079322
Alignment:
Q  178 tgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtca 277  Q
    ||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  46079426 tgtctatctgtctcttaacaactcattctctct--catctaaataatttattttaatcattcattgatcattctctctcatctaaaatgaacctatgtca 46079329  T
Q  278 ccaatgg 284  Q
     ||||||    
T  46079328 tcaatgg 46079322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 161 - 283
Target Start/End: Complemental strand, 52673301 - 52673181
Alignment:
Q  161 tgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatct 260  Q
    |||||||| ||| ||| ||||||||||||||||| |||  ||   ||||| ||||| |||||||||||||||||  |||||| |||||||||||||||||    
T  52673301 tgtcattgatatttttgtgtctatctctctcttaccaa--catattctctctcatcaaaataatttattttaattattcattcatcattctctctcatct 52673204  T
Q  261 aaaatgaacctatgtcaccaatg 283  Q
    |||||||||||||||||||||||    
T  52673203 aaaatgaacctatgtcaccaatg 52673181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 29724432 - 29724351
Alignment:
Q  181 ctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaa 264  Q
    |||||| ||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  29724432 ctatctttctcttaaccactcattatctctt--atctaaataatttattttaatcattcatttattattctctatcatctaaaa 29724351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 268
Target Start/End: Original strand, 29693184 - 29693287
Alignment:
Q  161 tgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatct 260  Q
    |||||||||||  ||| |||||||||||||  |||||||  | ||||||||  || ||||||||||||||||||  || |||||||||||||||||||||    
T  29693184 tgtcattggtacttttgtgtctatctctct--taacaacatattatctctt--atttaaataatttattttaattatttatttatcattctctctcatct 29693279  T
Q  261 aaaatgaa 268  Q
    ||||||||    
T  29693280 aaaatgaa 29693287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 53406575 - 53406486
Alignment:
Q  178 tgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaac 269  Q
    ||||||||||||||||||||| ||| | ||||||  |||||||||||||||||||||  || ||| |||||| ||| |||||||||||||||    
T  53406575 tgtctatctctctcttaacaattcattttctctt--atctaaataatttattttaattatttattcatcattttctttcatctaaaatgaac 53406486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 44015466 - 44015395
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaatg 283  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||||||||||  ||  ||||||||||||    
T  44015466 tcatctaaataatttattttaatcattcatctatcattctttctcatctaaaatacactaatgtcaccaatg 44015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 5052119 - 5052179
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatg 266  Q
    ||||| ||||| |||||||||||||||||| || ||||||||||||||||||| |||||||    
T  5052119 tctctctcatcaaaataatttattttaatcatttatttatcattctctctcatttaaaatg 5052179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 19473107 - 19473052
Alignment:
Q  210 tttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    |||||||||||||||||||||||||| ||||| ||||||| |||||| ||||||||    
T  19473107 tttcatctaaataatttattttaatcattcatgtatcattttctctcctctaaaat 19473052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 31455955 - 31455897
Alignment:
Q  205 atctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaa 263  Q
    |||||| |||||||||||||||||||||||| ||||||  ||||||||| |||||||||    
T  31455955 atctctctcatctaaataatttattttaatcattcattcttcattctctttcatctaaa 31455897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 50041874 - 50041816
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaa 264  Q
    ||||| ||||| |||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  50041874 tctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaa 50041816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 50049096 - 50049038
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaa 264  Q
    ||||| ||||| |||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  50049096 tctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaa 50049038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 23332136 - 23332199
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaac 269  Q
    ||||| |||| |||||||  |||||||||| ||||| || ||||||||||||||||||||||||    
T  23332136 tctctctcatttaaataacatattttaatcattcatctaacattctctctcatctaaaatgaac 23332199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 40202308 - 40202245
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaac 269  Q
    |||||||||||||||||||||||||||||  |||||| |||||| |||| | ||| ||||||||    
T  40202308 tctctttcatctaaataatttattttaataattcattcatcattatctcacctctgaaatgaac 40202245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 52198385 - 52198438
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| |||||||||||||||||| || || ||||||| |||||||||||||||    
T  52198385 tcatcaaaataatttattttaatcatttatctatcattatctctcatctaaaat 52198438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 36498652 - 36498600
Alignment:
Q  213 catctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    |||| ||||||||||||||||||  |||| |||||| ||||||||||||||||    
T  36498652 catcaaaataatttattttaatcactcatctatcatcctctctcatctaaaat 36498600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 1208745 - 1208706
Alignment:
Q  215 tctaaataatttattttaatccttcatttatcattctctc 254  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  1208745 tctaaataatttattttaatcattcattcatcattctctc 1208706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 9116267 - 9116228
Alignment:
Q  244 atcattctctctcatctaaaatgaacctatgtcaccaatg 283  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  9116267 atcattctctttcatctaaaatgaacctatgtcatcaatg 9116228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 31203355 - 31203410
Alignment:
Q  210 tttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||||| |||||||||||||||||   |||||||||| ||||| |||||||||||    
T  31203355 tttcatcgaaataatttattttaattgatcatttatcactctctttcatctaaaat 31203410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 11077921 - 11077844
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaatg 283  Q
    ||||| |||||||||||| |  |||||||| |||||  ||||||||||| |||| |||||||||  ||| ||||||||    
T  11077921 tctctctcatctaaataactatttttaatcattcatagatcattctctcccatccaaaatgaactaatgccaccaatg 11077844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 30643652 - 30643603
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctct 255  Q
    ||||| |||||||||||||||||||||||| |||||  |||||| |||||    
T  30643652 tctctctcatctaaataatttattttaatcattcatccatcattatctct 30643603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 51853503 - 51853560
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaac 269  Q
    |||||||||||| ||||||||||  |||||| | |||||||||||||  |||||||||    
T  51853503 tcatctaaataagttattttaattattcattcaacattctctctcataaaaaatgaac 51853560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 53176876 - 53176929
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    |||||||||||||||||||||||| |||||| || ||  ||| |||||||||||    
T  53176876 tcatctaaataatttattttaatcattcattcattatcttctgtcatctaaaat 53176929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 48915071 - 48914968
Alignment:
Q  178 tgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtca 277  Q
    ||||||||||||||||||||||||| | |||||  |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  48915071 tgtctatctctctcttaacaactcattctctct--catcaaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacttatgtca 48914974  T
Q  278 ccaatg 283  Q
    ||||||    
T  48914973 ccaatg 48914968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 48915462 - 48915359
Alignment:
Q  178 tgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtca 277  Q
    ||||||||||||||||||||||||| | |||||  |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  48915462 tgtctatctctctcttaacaactcattctctct--catcaaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacttatgtca 48915365  T
Q  278 ccaatg 283  Q
    ||||||    
T  48915364 ccaatg 48915359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 161 - 283
Target Start/End: Complemental strand, 19456413 - 19456293
Alignment:
Q  161 tgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatct 260  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||| | |||||  ||||||||||||||||||||||| |  ||| |||||||||||||||||    
T  19456413 tgtcattggcacctttgtgtctatctctttcttaacaattcattctctct--catctaaataatttattttaatcatctattcatcattctctctcatct 19456316  T
Q  261 aaaatgaacctatgtcaccaatg 283  Q
    |||||||| ||||||||||||||    
T  19456315 aaaatgaatctatgtcaccaatg 19456293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 48915261 - 48915160
Alignment:
Q  178 tgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtca 277  Q
    ||||||||||||||||||||||||| | |||||  |||| |||||||||||||||||| |||||| |||||||||||  |||||||||||||||||||||    
T  48915261 tgtctatctctctcttaacaactcattctctct--catcaaaataatttattttaatcattcattcatcattctctc--atctaaaatgaacctatgtca 48915166  T
Q  278 ccaatg 283  Q
    ||||||    
T  48915165 ccaatg 48915160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 26478550 - 26478669
Alignment:
Q  161 tgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatct 260  Q
    ||||||||||| |||| ||||||||| ||| ||||||| ||| |||||  ||||| ||||| ||||||||||||  |||||| |||||||||||||||||    
T  26478550 tgtcattggtacctttgtgtctatctttcttttaacaattcattatct--ttcatttaaatgatttattttaattattcattcatcattctctctcatct 26478647  T
Q  261 aaaatgaacctatgtcaccaat 282  Q
    ||||| ||||| ||||||||||    
T  26478648 aaaattaacctttgtcaccaat 26478669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 173 - 283
Target Start/End: Complemental strand, 50539819 - 50539711
Alignment:
Q  173 ctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaaccta 272  Q
    |||| ||||||||||||||||||||||||| |  |||||| || ||||||||||||||||||| |  ||| |||||| |||||| |||||||||||| ||    
T  50539819 ctttgtgtctatctctctcttaacaactcatt--ctcttttatttaaataatttattttaatcatctattcatcattatctctcttctaaaatgaactta 50539722  T
Q  273 tgtcaccaatg 283  Q
    |||||||||||    
T  50539721 tgtcaccaatg 50539711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 3950355 - 3950280
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaa 281  Q
    ||||||||||| |||||||||||||||||| |||||  ||||||||||||||||||||||| ||| ||||||||||    
T  3950355 tctctttcatcaaaataatttattttaatcattcatcgatcattctctctcatctaaaatgcaccaatgtcaccaa 3950280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 283
Target Start/End: Original strand, 27907691 - 27907800
Alignment:
Q  161 tgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatct 260  Q
    |||||| |||| |||| |||||||||||||||||||||||||   ||||| |||||||||||||||||||||           |||||||||| ||||||    
T  27907691 tgtcataggtaactttgtgtctatctctctcttaacaactca--ttctctctcatctaaataatttatttta-----------atcattctctttcatct 27907777  T
Q  261 aaaatgaacctatgtcaccaatg 283  Q
    |||||||||||||||||||||||    
T  27907778 aaaatgaacctatgtcaccaatg 27907800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 24671144 - 24671262
Alignment:
Q  161 tgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatct 260  Q
    |||||||| || |||| | || |||| ||||||||| ||||| | |||||  ||| ||||||||||||||||||| |||||| |||| ||||||||||||    
T  24671144 tgtcattgatacctttgtttccatctttctcttaaccactcattctctct--catttaaataatttattttaatcattcattcatcactctctctcatct 24671241  T
Q  261 aaaatgaacctatgtcaccaa 281  Q
    |||||||| | ||| ||||||    
T  24671242 aaaatgaatcaatggcaccaa 24671262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 19431488 - 19431391
Alignment:
Q  166 ttggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| ||||| ||||||| ||||||||||| | ||| | |||||  ||||||||||||||||||||||| |||||  |||||||| |||||||||||||    
T  19431488 ttggtttctttgtgtctatatctctcttaaccaatcattctctct--catctaaataatttattttaatcattcatccatcattctgtctcatctaaaat 19431391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 27032402 - 27032330
Alignment:
Q  161 tgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatc 235  Q
    |||||| |||| |||| |||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||    
T  27032402 tgtcatgggtaactttgtgtctatctctctcttaacaactca--ttctctctcatctaaataatttattttaatc 27032330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 314
Target Start/End: Original strand, 48843364 - 48843504
Alignment:
Q  161 tgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatct 260  Q
    |||||| |||| |||| | ||||||||||||||||||| ||| | |||||  |||||||||||||||||||||||           ||||||| ||||||    
T  48843364 tgtcataggtaactttgtatctatctctctcttaacaattcattctctct--catctaaataatttattttaatc-----------attctctttcatct 48843450  T
Q  261 aaaatgaacctatgtcaccaatggtacnnnnnnnctatggcaccaaagtatttc 314  Q
    |||||||||||||||||||||||| ||       |||||||||| |||||||||    
T  48843451 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttc 48843504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 44448552 - 44448499
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    |||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  44448552 tcatttaaataatttattttaatcattcatatatcattctctcccatctaaaat 44448499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 5398106 - 5398029
Alignment:
Q  180 tctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatc 259  Q
    ||||||||||||||||| ||||| | |||||  |||||||||| |||||||||||  |||||| ||||||||||| ||||    
T  5398106 tctatctctctcttaaccactcattctctct--catctaaatagtttattttaataattcattcatcattctctcccatc 5398029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 49177428 - 49177483
Alignment:
Q  208 tctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaa 264  Q
    |||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||    
T  49177428 tctttcatctaaataatttattttaatcattca-tcatcattttctctcatctaaaa 49177483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 51748544 - 51748612
Alignment:
Q  165 attggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatc 235  Q
    ||||||| |||| ||||||||| ||| ||||||||||| | |||||  |||||||||||||||||||||||    
T  51748544 attggtaactttgtgtctatctttcttttaacaactcattctctct--catctaaataatttattttaatc 51748612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 15106237 - 15106287
Alignment:
Q  204 tatctctttcatctaaataatttattttaatccttcatttatcattctctc 254  Q
    ||||||| |||| ||||||||||||||||||| ||||| ||||||||||||    
T  15106237 tatctctctcatgtaaataatttattttaatcattcatctatcattctctc 15106287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 46325650 - 46325597
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatc 259  Q
    ||||| ||||| |||||| ||||||||||| ||||| |||||||||||||||||    
T  46325650 tctctctcatcaaaataacttattttaatcattcatctatcattctctctcatc 46325597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 4213888 - 4213841
Alignment:
Q  218 aaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||||||||||||||||  |||| |||| ||||||||||||||||||    
T  4213888 aaataatttattttaatcactcatatatcgttctctctcatctaaaat 4213841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 11872248 - 11872189
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| ||||| |||||||||||| ||||| |||| | |||||||||| |||||||||||    
T  11872248 tctctctcatcaaaataatttattataatcattcaatcatcattctctttcatctaaaat 11872189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 17923857 - 17923920
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaac 269  Q
    ||||| |||||||||||||||||||||||  |||||  | |||||||||||||  |||||||||    
T  17923857 tctctctcatctaaataatttattttaattattcatccaacattctctctcataaaaaatgaac 17923920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 46325450 - 46325497
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatc 259  Q
    ||||| |||||||||||||||||| ||||| |||||||| ||||||||    
T  46325450 tcatcaaaataatttattttaatcattcatctatcattccctctcatc 46325497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 46284474 - 46284444
Alignment:
Q  204 tatctctttcatctaaataatttattttaat 234  Q
    |||||||||||||||||||||||||||||||    
T  46284474 tatctctttcatctaaataatttattttaat 46284444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 27032332 - 27032295
Alignment:
Q  244 atcattctctctcatctaaaatgaacctatgtcaccaa 281  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  27032332 atcattctctctcatataaaatgaacatatgtcaccaa 27032295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 34430053 - 34430102
Alignment:
Q  217 taaataatttattttaatccttcatttatcattctctctcatctaaaatg 266  Q
    ||||||||||||||||||| ||||| || | |||| ||||||||||||||    
T  34430053 taaataatttattttaatcattcatctaactttctttctcatctaaaatg 34430102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 49315790 - 49315741
Alignment:
Q  210 tttcatctaaataatttattttaatccttcatttatcattctctctcatc 259  Q
    ||||||| ||||||||||||||||||  |||| || ||||||||||||||    
T  49315790 tttcatcaaaataatttattttaatcactcatctaccattctctctcatc 49315741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 161 - 279
Target Start/End: Complemental strand, 32279395 - 32279281
Alignment:
Q  161 tgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatct 260  Q
    |||||||||||||||| |||||||||||||||||||||| ||    |||| |||| ||||||||||||||||||  |||||| |||||| ||||||||||    
T  32279395 tgtcattggtatctttgtgtctatctctctcttaacaaccca----ctctctcatttaaataatttattttaattattcattcatcattttctctcatct 32279300  T
Q  261 aaaatgaacctatgtcacc 279  Q
    |||||||||||||||||||    
T  32279299 aaaatgaacctatgtcacc 32279281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 2628522 - 2628418
Alignment:
Q  178 tgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtca 277  Q
    ||||||||||||||||||||||||| | |||||  |||||||||| |||||||||||| || ||| |||||||||||||||||||||||||| |||||||    
T  2628522 tgtctatctctctcttaacaactcattctctct--catctaaatagtttattttaatcatttattcatcattctctctcatctaaaatgaacttatgtca 2628425  T
Q  278 ccaatgg 284  Q
    |||||||    
T  2628424 ccaatgg 2628418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 168 - 316
Target Start/End: Complemental strand, 46425413 - 46425278
Alignment:
Q  168 ggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatga 267  Q
    |||| |||| |||||||||||||||||||||||||   ||||| |||||||||||||||||||||           |||||||||| |||||||||||||    
T  46425413 ggtaactttgtgtctatctctctcttaacaactca--ttctctctcatctaaataatttatttta-----------atcattctctttcatctaaaatga 46425327  T
Q  268 acctatgtcaccaatggtacnnnnnnnctatggcaccaaagtatttccc 316  Q
    ||||||||||||||||| ||       |||||||||| |||||||||||    
T  46425326 acctatgtcaccaatggcaccaaaaaactatggcacccaagtatttccc 46425278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 9488870 - 9488753
Alignment:
Q  164 cattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattct-ctctcatctaa 262  Q
    ||||| || |||| ||| ||||||||||||||||||||| |  || ||   ||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  9488870 cattgatacctttgtgtatatctctctcttaacaactcattccctattc--tctaaataatttattttaatcattcattcatcattctcctctcatctaa 9488773  T
Q  263 aatgaacctatgtcaccaat 282  Q
    ||||||| ||||||| ||||    
T  9488772 aatgaacttatgtcatcaat 9488753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 18868024 - 18867921
Alignment:
Q  167 tggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatg 266  Q
    ||||| |||| |||||||||||||||||||||||||   ||||| |||||||||||||||||||||           |||||||||| ||||||||||||    
T  18868024 tggtaactttgtgtctatctctctcttaacaactca--ttctctctcatctaaataatttatttta-----------atcattctctttcatctaaaatg 18867938  T
Q  267 aacctatgtcaccaatg 283  Q
    |||||||||||||||||    
T  18867937 aacctatgtcaccaatg 18867921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 16876812 - 16876747
Alignment:
Q  168 ggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatc 235  Q
    |||| |||| |||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||    
T  16876812 ggtaactttgtgtctatctctctcttaacaactca--ttctctctcatctaaataatttattttaatc 16876747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 23185998 - 23185933
Alignment:
Q  168 ggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatc 235  Q
    |||| |||| |||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||    
T  23185998 ggtaactttgtgtctatctctctcttaacaactca--ttctctctcatctaaataatttattttaatc 23185933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 316
Target Start/End: Original strand, 34328118 - 34328235
Alignment:
Q  186 tctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaatggt 285  Q
    ||||||||||||||||| | |||||  |||||||||||||||||||||||           ||||||| ||||||||||||||||||||||||||||||     
T  34328118 tctctcttaacaactcattctctct--catctaaataatttattttaatc-----------attctctttcatctaaaatgaacctatgtcaccaatggc 34328204  T
Q  286 acnnnnnnnctatggcaccaaagtatttccc 316  Q
    ||       |||||||||| |||||||||||    
T  34328205 accaaaaaactatggcacccaagtatttccc 34328235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 40591046 - 40591122
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaat 282  Q
    |||||||||||||||||||||||||||||| || || || |||||| | |||||||||||| ||  |||||||||||    
T  40591046 tctctttcatctaaataatttattttaatcatttatctaacattctatttcatctaaaatgtactaatgtcaccaat 40591122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 37685244 - 37685186
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacc 270  Q
    |||||||||||||||||||||||| |||||  | ||||||||||| |||||||||||||    
T  37685244 tcatctaaataatttattttaatcattcatccaacattctctctcgtctaaaatgaacc 37685186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 685054 - 685000
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatg 266  Q
    |||||||||||||||||||||||| ||||| ||  ||||| ||||||||||||||    
T  685054 tcatctaaataatttattttaatctttcatctaatattctttctcatctaaaatg 685000  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 11369106 - 11369053
Alignment:
Q  215 tctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaa 268  Q
    ||||||||||||||||||||| || ||  | |||||||||||||||||||||||    
T  11369106 tctaaataatttattttaatcatttatccaacattctctctcatctaaaatgaa 11369053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 33957527 - 33957482
Alignment:
Q  220 ataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||||    
T  33957527 ataatttattttaatcattcatctatcattctttctcatctaaaat 33957482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 42971727 - 42971644
Alignment:
Q  180 tctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||||||||||||||| | ||| | ||||| |||||||||||||||||||||||| |||    | ||||||||||||||||||||    
T  42971727 tctatctctctcttaacca-tcaat-tctctctcatctaaataatttattttaatcattcgcccaacattctctctcatctaaaat 42971644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 19495200 - 19495145
Alignment:
Q  210 tttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||||||||| ||| |||||||||| ||||||||||||||| | | |||||||||    
T  19495200 tttcatctaaagaatatattttaatcattcatttatcattcttttttatctaaaat 19495145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 43368540 - 43368497
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctct 255  Q
    |||||||||||||||||||||||| |||||  ||||||||||||    
T  43368540 tcatctaaataatttattttaatcattcatccatcattctctct 43368497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 32204779 - 32204832
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    |||| ||||||||||||||||||| || || ||||||  |||||||||||||||    
T  32204779 tcatataaataatttattttaatcatttatctatcatcttctctcatctaaaat 32204832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 168 - 316
Target Start/End: Original strand, 9928256 - 9928391
Alignment:
Q  168 ggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatga 267  Q
    |||| |||| |||||||||||||||||||||||||   ||||| |||||||||||||||||||||           |||||||||| |||||||||||||    
T  9928256 ggtaactttgtgtctatctctctcttaacaactca--ttctctctcatctaaataatttatttta-----------atcattctctttcatctaaaatga 9928342  T
Q  268 acctatgtcaccaatggtacnnnnnnnctatggcaccaaagtatttccc 316  Q
    ||||||||||||||||| ||       |||||||||| |||||||||||    
T  9928343 acctatgtcaccaatggcaccaaaaaactatggcacccaagtatttccc 9928391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 22469694 - 22469797
Alignment:
Q  168 ggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatga 267  Q
    |||| |||| ||||||||||| ||||||||||||| | |||||  ||||||||||||||||||||           |||||||||| |||||||||||||    
T  22469694 ggtaactttgtgtctatctctttcttaacaactcattctctct--catctaaataatttatttta-----------atcattctctttcatctaaaatga 22469780  T
Q  268 acctatgtcaccaatgg 284  Q
    |||||||||||||||||    
T  22469781 acctatgtcaccaatgg 22469797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 277
Target Start/End: Original strand, 9549359 - 9549472
Alignment:
Q  164 cattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatccttcatttat----cattctctctcatc 259  Q
    ||||||||||||| ||| |||||||||  |||||||||| | |||||   || ||||||||||||||||||| |||||| ||    ||||||||||||||    
T  9549359 cattggtatctttgtgtttatctctct--taacaactcattctctcta--atttaaataatttattttaatcattcattcattcaccattctctctcatc 9549454  T
Q  260 taaaatgaacctatgtca 277  Q
    ||||| ||||||||||||    
T  9549455 taaaacgaacctatgtca 9549472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 457686 - 457739
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||||||||||    
T  457686 tcatctaaataatttattttaatcattcatccatcattctctctcatctaaaat 457739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 8585733 - 8585792
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    |||||||||||||||| ||||||||||||| |||||  |||||||||| |||||||||||    
T  8585733 tctctttcatctaaatcatttattttaatcattcatccatcattctctttcatctaaaat 8585792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 24226089 - 24226148
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| ||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  24226089 tctctgtcatcaaaataatttattttaatcattcatctatcattttctctcatctaaaat 24226148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 26847179 - 26847230
Alignment:
Q  214 atctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||||||||    
T  26847179 atctaaataatttattttactcattcatctatcattctctctcatctaaaat 26847230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 28963650 - 28963575
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacctatgtcaccaa 281  Q
    ||||| ||||| |||||| ||||||||||| ||||||  |||||||||||||||||||||| ||  ||||||||||    
T  28963650 tctctctcatcaaaataagttattttaatcattcattcttcattctctctcatctaaaatgcactaatgtcaccaa 28963575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 7506627 - 7506692
Alignment:
Q  168 ggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatc 235  Q
    |||| |||||| | ||||||||||||||||||||| | |||||  |||||||||||||||||||||||    
T  7506627 ggtaactttatatttatctctctcttaacaactcattctctct--catctaaataatttattttaatc 7506692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 512774 - 512833
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| ||||| ||||||||||||||||||  |||| ||| |||||||||||||||||||    
T  512774 tctctctcatcaaaataatttattttaatcactcatctattattctctctcatctaaaat 512833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 167240 - 167183
Alignment:
Q  208 tctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    |||||||| ||||||||||||||||||| |||| | | |||| |||||||||||||||    
T  167240 tctttcatttaaataatttattttaatctttcaatcaacattatctctcatctaaaat 167183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 6793531 - 6793584
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||| ||||||||||||||||||  |||| |||| ||||||||||||||||||    
T  6793531 tcatcaaaataatttattttaatcactcatctatcgttctctctcatctaaaat 6793584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 28730037 - 28729980
Alignment:
Q  208 tctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    ||||||||| |||||||||||||||| |  | || |||||||||||||||||||||||    
T  28730037 tctttcatcaaaataatttattttaagcactgatctatcattctctctcatctaaaat 28729980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 3037434 - 3037370
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaaatgaacc 270  Q
    ||||||||||||||| |||||||||||||| |||||  | |||| ||||||||| |||| |||||    
T  3037434 tctctttcatctaaaaaatttattttaatcattcatccaacattttctctcatcaaaaaagaacc 3037370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 6139349 - 6139406
Alignment:
Q  206 tctctttcatctaaataatttattttaatccttcatttatcattctctctcatctaaa 263  Q
    ||||| |||||||||||||||||||||||| ||  | || ||||||||||||| ||||    
T  6139349 tctctctcatctaaataatttattttaatcatttgtctaacattctctctcatttaaa 6139406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 29393747 - 29393784
Alignment:
Q  244 atcattctctctcatctaaaatgaacctatgtcaccaa 281  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  29393747 atcattctctctcatctaaaatgtaccaatgtcaccaa 29393784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 31743916 - 31743956
Alignment:
Q  244 atcattctctctcatctaaaatgaacctatgtcaccaatgg 284  Q
    |||||||||| ||||||||||||||| ||||| ||||||||    
T  31743916 atcattctctttcatctaaaatgaacttatgttaccaatgg 31743956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 31608 - 31661
Alignment:
Q  212 tcatctaaataatttattttaatccttcatttatcattctctctcatctaaaat 265  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||    
T  31608 tcatctaaataatttattttaatcattcatctattattctctctcgtctaaaat 31661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 15079 - 15151
Alignment:
Q  161 tgtcattggtatctttatgtctatctctctcttaacaactcagtatctctttcatctaaataatttattttaatc 235  Q
    |||||| |||| |||| ||||||||||| |||||||||||||   ||||| ||||| ||||||||||||||||||    
T  15079 tgtcataggtaactttgtgtctatctctatcttaacaactca--ttctctctcatcaaaataatttattttaatc 15151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 15149 - 15189
Alignment:
Q  244 atcattctctctcatctaaaatgaacctatgtcaccaatgg 284  Q
    |||||| ||| ||||||||||||||| ||||||||||||||    
T  15149 atcattatctttcatctaaaatgaacatatgtcaccaatgg 15189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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