View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_low_10 (Length: 475)
Name: NF19550_low_10
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Original strand, 7470719 - 7471167
Alignment:
| Q |
19 |
tgcagaatatcaggccaagtttggccgaatttccagaagaaataatcaccctgctggaatcctgttgggataaaaacccaaaactcagaccagaattcaa |
118 |
Q |
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| T |
7470719 |
tgcagaatatcaggccaagtttggctgaatttccagaagaaataatcaccctgctggaatcctgttgggataaaaacccaaaactcagaccagaattcaa |
7470818 |
T |
|
| Q |
119 |
ggaaatcactgaaatactgataaggattctctttgatctttacacagccaagattaatgcacttgcaagcataaaaccaatctgtactgatcgcgttgat |
218 |
Q |
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| T |
7470819 |
ggaaatcactgaaatactgataagcattctctttgatctttacacagccaagattaatgcacttgcaagcataaaaccaatctgtactgatcgcgttgat |
7470918 |
T |
|
| Q |
219 |
ttcgaaattgaagaagaaagttcaaatgtgcaacatacgacagctagcttagtgtcccctgttgagaatgagactctaggacccgatggaggagcagaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7470919 |
ttcgaaattgaagaagaaagttcaaatgtgcaacatactacagctagcttagtgtccactgttgagaatgagactctaggacccgatggaggagcagaag |
7471018 |
T |
|
| Q |
319 |
ctgttaacagtctcacattggatgaaagtcgagatcaatctggatctcaagctgaatctcagagtggaacacaaacaccattccatgacttggttgaaaa |
418 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7471019 |
ctgttaacagtctcatattggatgaaagtcgagatcaatctggatctcaagctgaatctcagagtggaacacaaacaccattccatgacttggttgaaaa |
7471118 |
T |
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| Q |
419 |
gaaaccaaaacaaaagagtaagatgaagcatttattttcctatattctt |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7471119 |
gaaaccaaaacaaaagagtaagatgaagcatttattttcctattttctt |
7471167 |
T |
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