View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_low_11 (Length: 474)
Name: NF19550_low_11
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_low_11 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 45074227 - 45074683
Alignment:
| Q |
18 |
tggatttattgagatttgattgtcataagaaacaaaacggtagatatctcttttgagaattaaggatgtatacttaccaaaccatgaatccaaccacgaa |
117 |
Q |
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| T |
45074227 |
tggatttattgagatttgattgtcataagaaacaaaacggtagatatctcttttgagaattaaggatgtatacttaccaaaccatgaatccaaccacgaa |
45074326 |
T |
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| Q |
118 |
tttgttagctgtggaacatagttttgttaactagcattgtcagaatagttggataaggttaaatctcgcagcgaaatctgggcagccatgacacatccgt |
217 |
Q |
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| T |
45074327 |
tttgttagctgtggaacatagttttgttaactagcattgtcagaatagttggataaggttaaatctcgcagcgaaatctgggcagccatgacacatccgt |
45074426 |
T |
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| Q |
218 |
tgcaggcctatgcaagaagctttggtttagtctagtacatactatcatgcaagaaaataacctttgctaccattatataatctgataatataaagttcaa |
317 |
Q |
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| T |
45074427 |
tgcaggcctatgcaagaagctttggtttagtctagtacatactatcatgcaagaaaataacctttgctaccattatataatctgataatataaagttcaa |
45074526 |
T |
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| Q |
318 |
aatcatccatattatttcattnnnnnnnnnnnnnnngttacatccattttatctaacgacactacttttgaagttgcaagtcttgaactgaacattttca |
417 |
Q |
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| T |
45074527 |
aatcatccatattatttcattaaaaagaaaaaaaaagttacatccattttatctaatgacactacttttgaagttacaagtcttgaactgaacattttca |
45074626 |
T |
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| Q |
418 |
atggtaagtttatcagttggaaaaggacattcaaatttttctttctctggcagcaat |
474 |
Q |
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| T |
45074627 |
atggtaagtttatcagttggaaaaggacattcaaatttttctttctctgccagcaat |
45074683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 355 - 474
Target Start/End: Original strand, 45077797 - 45077913
Alignment:
| Q |
355 |
ttacatccattttatctaacgacactacttttgaagttgcaagtcttgaactgaacattttcaatggtaagtttatcagttggaaaaggacattcaaatt |
454 |
Q |
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| T |
45077797 |
ttacatccatgttatcagaagacactactttggaagttacaagtcttgaattgaacattttcgatggctagtttatctgttggaaaaggacattcaa--- |
45077893 |
T |
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| Q |
455 |
tttctttctctggcagcaat |
474 |
Q |
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| T |
45077894 |
tttccttctcttgcagcaat |
45077913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 451
Target Start/End: Original strand, 45082113 - 45082189
Alignment:
| Q |
375 |
gacactacttttgaagttgcaagtcttgaactgaacattttcaatggtaagtttatcagttggaaaaggacattcaa |
451 |
Q |
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| T |
45082113 |
gacactactttggaagttgcaagtcttgaattgaacattttcaatgggtagtttatctcttggaaaaggacattcaa |
45082189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 45067040 - 45067101
Alignment:
| Q |
388 |
aagttgcaagtcttgaactgaacattttcaatggtaagtttatcagttggaaaaggacattc |
449 |
Q |
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| T |
45067040 |
aagttacaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattc |
45067101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 8881152 - 8881227
Alignment:
| Q |
79 |
aaggatgtatacttaccaaaccatgaatccaaccacgaatttgttagctgtggaacatagttttgttaactagcat |
154 |
Q |
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| T |
8881152 |
aaggatgtatacctgccgaaccataaatccaaccacgaatttggtagctgtggaacatagttttgttaactagcat |
8881227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 451
Target Start/End: Original strand, 12697989 - 12698065
Alignment:
| Q |
375 |
gacactacttttgaagttgcaagtcttgaactgaacattttcaatggtaagtttatcagttggaaaaggacattcaa |
451 |
Q |
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| T |
12697989 |
gacactactttgaaagttacaagtcttgaacagaacattttcaatgggtagtttaactgttggaaaaggacattcaa |
12698065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 37485237 - 37485313
Alignment:
| Q |
167 |
tggataaggttaaatctcgcagcgaaatctgggcagccatgacacatccgttgcaggcctatgcaagaagctttggt |
243 |
Q |
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| T |
37485237 |
tggatatggttaaatctcacagcgaaatctaggcagccatgacacaatcattgcacgcctatgcaaaaagttttggt |
37485313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 451
Target Start/End: Original strand, 34504354 - 34504429
Alignment:
| Q |
376 |
acactacttttgaagttgcaagtcttgaactgaacattttcaatggtaagtttatcagttggaaaaggacattcaa |
451 |
Q |
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| T |
34504354 |
acactacttttaatgttacaagtcttgaactgaacatcttcaatagccaatttatctgttggaaagggacattcaa |
34504429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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