View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_low_12 (Length: 421)
Name: NF19550_low_12
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 15234344 - 15234738
Alignment:
| Q |
19 |
catggtacttcttcgagaatgttgattcgaacatgaaaacgcggccatgaaaataaaccaagattggaaatttggaaagtgggtttgtgatttttggaag |
118 |
Q |
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| T |
15234344 |
catggtacttcttcgagaatgttgattcgaacatgaaaacgccgccatgaaaataaaccaagattggaaatttggaaagtgggtttgtgatttttggaag |
15234443 |
T |
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| Q |
119 |
gtaaatacgagatgaaattgtggggttgtgtgggatttgtatatctttggatgaaattccagtgttagggtcgttgagagatggaggagcaaatggggat |
218 |
Q |
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| T |
15234444 |
gtaaatacgagatgaaattgtggggttgtgtgggatttgtatatctttggatgaaattccagtgttagggtcgttgagagatggaggagcaaatggggat |
15234543 |
T |
|
| Q |
219 |
tgttttggtctttctattgaaccgtcgctaaagatacgaaggatatttcccatttcggtaactatttctttagtgatggtttttggtgtcgtgggtgttg |
318 |
Q |
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| T |
15234544 |
tgttttggtctttctattgaaccgtcgctaaagatacgaaggatatttcccatttcggtaactatttctttagtgatggtttttggtgtcgtgggtgttg |
15234643 |
T |
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| Q |
319 |
tggaagccatttcaattgaggatgtgaagagtgtttgaaaaggagtttcaatgtaaaatatgagggttaatttggtgttttgattggtgatgatgt |
414 |
Q |
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| T |
15234644 |
tggaagccatttcaattgaggatgtgaagagtgtttg-aaaggagtttcaatgtaaaatatgagggttaatttggtgttttgattggtgatgatgt |
15234738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 17473179 - 17472847
Alignment:
| Q |
19 |
catggtacttcttcgagaatgttgattcgaacatgaaaacgcggccatgaaaataaaccaagattggaaatttggaaagtgggtttgtgatttttggaag |
118 |
Q |
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|||||||| ||| ||||||| |||||||| |||||| ||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||| |
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| T |
17473179 |
catggtacaactttgagaatgcggattcgaagatgaaagcgccgccatgaaaataaaccaggattggaaattttgaaggtgggtttgtgatttttagaag |
17473080 |
T |
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| Q |
119 |
gtaaatacgagatgaaattgtggggttgtgtgggatttgtatatctttggatgaaattccagtgttagggtcgttgagagatggaggagcaaatggggat |
218 |
Q |
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||| || ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||| ||||||||||||||| | ||||| ||| |
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| T |
17473079 |
gtatatgcgagatgaaattgtggggttgtgtgggatttcaatgtctttggatgaaagtccagtgtttgggtcattgagagatggaggaaccaatggtgat |
17472980 |
T |
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| Q |
219 |
tgttttggtctttctattgaaccgtcgctaaagatacgaaggatatttcccatttcggtaactatttctttagtgatggtttttggtgtcgtgggtgttg |
318 |
Q |
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| T |
17472979 |
tgtgatggtctttccactgaaccgtcgctaaagatacgaatgaatgttccaaattcggtaactatttctttagcgacggtttctggtgtggtttgtgttt |
17472880 |
T |
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| Q |
319 |
tggaagccatttcaattgaggatgtgaagagtg |
351 |
Q |
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| T |
17472879 |
tggaagccatttcaactgaggatgaaaagagtg |
17472847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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