View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19550_low_14 (Length: 378)

Name: NF19550_low_14
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19550_low_14
NF19550_low_14
[»] chr8 (16 HSPs)
chr8 (11-236)||(19171582-19171807)
chr8 (246-363)||(19172196-19172313)
chr8 (11-183)||(19288441-19288612)
chr8 (74-192)||(19338181-19338296)
chr8 (48-192)||(19377669-19377813)
chr8 (50-205)||(19346965-19347120)
chr8 (65-205)||(19397974-19398114)
chr8 (74-205)||(19414330-19414461)
chr8 (74-191)||(19501882-19501999)
chr8 (74-192)||(19356206-19356321)
chr8 (65-205)||(19552768-19552908)
chr8 (65-205)||(19579780-19579920)
chr8 (104-205)||(19453042-19453140)
chr8 (104-205)||(19527936-19528034)
chr8 (112-192)||(19406116-19406193)
chr8 (308-341)||(24785524-24785557)
[»] chr5 (2 HSPs)
chr5 (246-344)||(4735062-4735163)
chr5 (246-344)||(26836599-26836700)
[»] chr2 (1 HSPs)
chr2 (246-363)||(1613351-1613471)
[»] chr4 (1 HSPs)
chr4 (269-344)||(21207585-21207663)
[»] chr1 (1 HSPs)
chr1 (121-205)||(36312830-36312914)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 19171582 - 19171807
Alignment:
Q  11 caaagggaatgagtttcgtaaatatcgtactaaactatatttgaaatatccaagtacctttacgtgcatatttttgtttctttttcgcgacaaataaaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19171582 caaagggaatgagtttcgtaaatatcgtactaaactatatttgaaatatccaagtacctttacgtgcatatttttgtttctttttcgcgacaaataaaag 19171681  T
Q  111 aagtgggcataataggagtatagcagctgctattgcaacaccaatccatatccacatgcttttacctgcattgactatacactataaatttgaatattaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19171682 aagtgggcataataggagtatagcagctgctattgcaacaccaatccatatccgcatgcttttacctgcattgactatacactataaatttgaatattaa 19171781  T
Q  211 tagcttcctatgtaatttctactagt 236  Q
    ||||||||||||||||||||||||||    
T  19171782 tagcttcctatgtaatttctactagt 19171807  T

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Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 246 - 363
Target Start/End: Original strand, 19172196 - 19172313
Alignment:
Q  246 agtgagatgccacaatctgattttctatccagatatggatgatgttagtaatcttgatagtgttatgtgttatttactatacattatttttgaattggac 345  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19172196 agtgagatgccacaatctgattttctatccagatatggtacatgttagtaatcttgatagtgttatgtgttatttactatacattatttttgaattggac 19172295  T
Q  346 tttttattgtaattttat 363  Q
    ||||||||||||||||||    
T  19172296 tttttattgtaattttat 19172313  T

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Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 19288612 - 19288441
Alignment:
Q  11 caaagggaatgagtttcgtaaatatcgtactaaactatatttgaaatatccaagtacctttacgtgcatatttttgtttctttttcgcgacaaataaaag 110  Q
    |||||||| ||||||| |||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||||  | ||| |||||||    
T  19288612 caaagggattgagtttagtaaatat-gtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaag 19288514  T
Q  111 aagtgggcataataggagtatagcagctgctattgcaacaccaatccatatccacatgcttttacctgcattg 183  Q
     ||||||||||||| |||||||||||||||||||||| |||| ||| |||||||| || ||||||||||||||    
T  19288513 gagtgggcataatatgagtatagcagctgctattgcagcacctatcaatatccacctgtttttacctgcattg 19288441  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 74 - 192
Target Start/End: Complemental strand, 19338296 - 19338181
Alignment:
Q  74 gtgcatatttttgtttctttttcgcgacaaataaaagaagtgggcataataggagtatagcagctgctattgcaacaccaatccatatccacatgctttt 173  Q
    |||||||||||||||||||||| || |  |||||||  ||||||||||||| ||||| ||||| ||| |||||| |||| ||||||||||   | || ||    
T  19338296 gtgcatatttttgtttctttttggctaggaataaaatgagtgggcataatatgagtaaagcagttgcgattgcagcacctatccatatcc---tcctctt 19338200  T
Q  174 acctgcattgactatacac 192  Q
    |||||||||||||||||||    
T  19338199 acctgcattgactatacac 19338181  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 19377813 - 19377669
Alignment:
Q  48 tatttgaaatatccaagtacctttacgtgcatatttttgtttctttttcgcgacaaataaaagaagtgggcataataggagtatagcagctgctattgca 147  Q
    ||||| |||||||||  |||||| | ||| |||||||||||||||||| || |   ||| ||  ||||||||||||| ||||| ||||| | | ||||||    
T  19377813 tattttaaatatccagataccttgaagtgaatatttttgtttctttttggctagccatataatgagtgggcataatatgagtaaagcagttccgattgca 19377714  T
Q  148 acaccaatccatatccacatgcttttacctgcattgactatacac 192  Q
    ||||| |||||||||||| |  |||||||||||||  ||||||||    
T  19377713 acacctatccatatccacttttttttacctgcatttgctatacac 19377669  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 19347120 - 19346965
Alignment:
Q  50 tttgaaatatccaagtacctttacgtgcatatttttgtttctttttcgcgacaaataaaagaagtgggcataataggagtatagcagctgctattgcaac 149  Q
    |||||| ||||||  |||||| | |||||||||||||||||||||| || |   ||||||  | |||||| |||| ||||| ||||||||| |||| |      
T  19347120 tttgaagtatccatataccttgaagtgcatatttttgtttctttttggctaagcataaaatgattgggcaaaatatgagtaaagcagctgcgattgtaga 19347021  T
Q  150 accaatccatatccacatgcttttacctgcattgactatacactataaatttgaat 205  Q
    |   |||||||||||| |  ||||||||||||||||||||||| || |||||||||    
T  19347020 agttatccatatccacttttttttacctgcattgactatacacaattaatttgaat 19346965  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 205
Target Start/End: Complemental strand, 19398114 - 19397974
Alignment:
Q  65 tacctttacgtgcatatttttgtttctttttcgcgacaaataaaagaagtgggcataataggagtatagcagctgctattgcaacaccaatccatatcca 164  Q
    |||||| | |||||||||||| ||||||||| || |   ||| ||  ||||||||||||| ||||| ||||| ||| |||||| |||| |||||| ||||    
T  19398114 taccttgaagtgcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagcagttgcaattgcagcacctatccatttcca 19398015  T
Q  165 catgcttttacctgcattgactatacactataaatttgaat 205  Q
    | |  || |||||||||||||||||||  || |||||||||    
T  19398014 cctttttatacctgcattgactatacaaaatcaatttgaat 19397974  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 19414461 - 19414330
Alignment:
Q  74 gtgcatatttttgtttctttttcgcgacaaataaaagaagtgggcataataggagtatagcagctgctattgcaacaccaatccatatccacatgctttt 173  Q
    |||||||||||| ||||||||| || |   ||| ||  ||||||||||||| ||||| ||||| ||  |||||| |||| |||||||||||| |  || |    
T  19414461 gtgcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagcagttgtaattgcagcacctatccatatccacctttttat 19414362  T
Q  174 acctgcattgactatacactataaatttgaat 205  Q
    ||||||||||||||||||  || |||||||||    
T  19414361 acctgcattgactatacaaaatcaatttgaat 19414330  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 19501882 - 19501999
Alignment:
Q  74 gtgcatatttttgtttctttttcgcgacaaataaaagaagtgggcataataggagtatagcagctgctattgcaacaccaatccatatccacatgctttt 173  Q
    |||||||||||||||||||||| || |   ||| || ||||| |||||||| ||||| ||||| |||  |||||||||| |||||||||||| |  || |    
T  19501882 gtgcatatttttgtttcttttttgctaggcatagaataagtgagcataatatgagtaaagcagttgcggttgcaacaccgatccatatccacttttttct 19501981  T
Q  174 acctgcattgactataca 191  Q
    |||||||||  |||||||    
T  19501982 acctgcatttgctataca 19501999  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 192
Target Start/End: Complemental strand, 19356321 - 19356206
Alignment:
Q  74 gtgcatatttttgtttctttttcgcgacaaataaaagaagtgggcataataggagtatagcagctgctattgcaacaccaatccatatccacatgctttt 173  Q
    |||||||||||||||||||||| || |   ||||||  ||||||||||||| ||||| || || ||| |||||| |||| | ||||||||   | || ||    
T  19356321 gtgcatatttttgtttctttttggctaggcataaaatgagtgggcataatatgagtaaagaagttgcgattgcagcacctacccatatcc---tcctctt 19356225  T
Q  174 acctgcattgactatacac 192  Q
    |||||||||||||||||||    
T  19356224 acctgcattgactatacac 19356206  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 19552768 - 19552908
Alignment:
Q  65 tacctttacgtgcatatttttgtttctttttcgcgacaaataaaagaagtgggcataataggagtatagcagctgctattgcaacaccaatccatatcca 164  Q
    |||||| | |||||||||||| ||||||||| || |   ||| ||  ||||||||||||| ||||| || || ||| |||||| |||  |||||||||||    
T  19552768 taccttgaagtgcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagtagttgcaattgcagcacatatccatatcca 19552867  T
Q  165 catgcttttacctgcattgactatacactataaatttgaat 205  Q
    |    || |||||||||||||||||||  ||||||||||||    
T  19552868 ccattttatacctgcattgactatacaaaataaatttgaat 19552908  T

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Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 205
Target Start/End: Complemental strand, 19579920 - 19579780
Alignment:
Q  65 tacctttacgtgcatatttttgtttctttttcgcgacaaataaaagaagtgggcataataggagtatagcagctgctattgcaacaccaatccatatcca 164  Q
    |||||| | |||||||||||| ||||||||| || |   ||| ||  ||||||||||||| ||||| || || ||| |||||| |||  |||||||||||    
T  19579920 taccttgaagtgcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagtagttgcaattgcagcacatatccatatcca 19579821  T
Q  165 catgcttttacctgcattgactatacactataaatttgaat 205  Q
    |    || |||||||||||||||||||  ||||||||||||    
T  19579820 ccattttatacctgcattgactatacaaaataaatttgaat 19579780  T

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Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 19453140 - 19453042
Alignment:
Q  104 ataaaagaagtgggcataataggagtatagcagctgctattgcaacaccaatccatatccacatgcttttacctgcattgactatacactataaatttga 203  Q
    ||||||| ||||| |||| || ||| | ||||| ||| |||||| |||| |||||||||||| |   |||||||||||||||||||||| || |||||||    
T  19453140 ataaaaggagtggacatagtatgagcagagcagatgcgattgcagcacctatccatatccactt---tttacctgcattgactatacacaatcaatttga 19453044  T

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Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 19527936 - 19528034
Alignment:
Q  104 ataaaagaagtgggcataataggagtatagcagctgctattgcaacaccaatccatatccacatgcttttacctgcattgactatacactataaatttga 203  Q
    ||||||| ||||| |||| || ||| | ||||| ||| |||||| |||| |||||||||||| |   |||||||||||||||||||||| || |||||||    
T  19527936 ataaaaggagtggacatagtatgagcagagcagatgcgattgcagcacctatccatatccactt---tttacctgcattgactatacacaatcaatttga 19528032  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 19406193 - 19406116
Alignment:
Q  112 agtgggcataataggagtatagcagctgctattgcaacaccaatccatatccacatgcttttacctgcattgactatacac 192  Q
    ||||| ||||||| ||||||||||| ||| |||||| |||| ||||||||||||    |||||||||||| ||||||||||    
T  19406193 agtggacataatatgagtatagcagatgcgattgcagcacctatccatatccac---tttttacctgcatcgactatacac 19406116  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 24785557 - 24785524
Alignment:
Q  308 ttatgtgttatttactatacattatttttgaatt 341  Q
    ||||||||||||||||||||||| ||||||||||    
T  24785557 ttatgtgttatttactatacattgtttttgaatt 24785524  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 246 - 344
Target Start/End: Complemental strand, 4735163 - 4735062
Alignment:
Q  246 agtgagatgccacaatctgattttctatccagatatggatgatgttagtaatcttgatagtgtt---atgtgttatttactatacattatttttgaattg 342  Q
    ||||||||  |||||| ||| ||||||||||  ||||||| |||||||| ||||| ||||||||   |||||||||||| |||||||| |||||||||||    
T  4735163 agtgagatttcacaatttgaatttctatccaattatggatcatgttagttatcttaatagtgtttttatgtgttatttattatacattgtttttgaattg 4735064  T
Q  343 ga 344  Q
    ||    
T  4735063 ga 4735062  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 344
Target Start/End: Complemental strand, 26836700 - 26836599
Alignment:
Q  246 agtgagatgccacaatctgattttctatccagatatggatgatgttagtaatcttgatagtgtt---atgtgttatttactatacattatttttgaattg 342  Q
    ||||||||  ||||||||||  |||||||||  ||| ||| | |||||| ||||| ||||||||   ||||||||||||||||||||| |||||||||||    
T  26836700 agtgagatttcacaatctgaacttctatccaattatagatcacgttagttatcttaatagtgtttttatgtgttatttactatacattgtttttgaattg 26836601  T
Q  343 ga 344  Q
    ||    
T  26836600 ga 26836599  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 363
Target Start/End: Complemental strand, 1613471 - 1613351
Alignment:
Q  246 agtgagatgccacaatctgattttctatccagatatggatgatgttagtaatcttgatagtgtt---atgtgttatttactatacattatttttgaattg 342  Q
    ||||||||  ||||||||||  ||||||| |  ||||||| | |||||| ||||| ||||||||   ||||||||||||||||||||| |||||||||||    
T  1613471 agtgagatttcacaatctgaacttctatcgaattatggatcacgttagttatcttaatagtgtttttatgtgttatttactatacattgtttttgaattg 1613372  T
Q  343 gactttttattgtaattttat 363  Q
     | | || || ||||||||||    
T  1613371 aattcttaatggtaattttat 1613351  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 344
Target Start/End: Complemental strand, 21207663 - 21207585
Alignment:
Q  269 tctatccagatatggatgatgttagtaatcttgatagtgtt---atgtgttatttactatacattatttttgaattgga 344  Q
    ||||||||  ||||||| |||||||| ||| | ||||||||   |||||||||||| ||||||||||||||||||||||    
T  21207663 tctatccaattatggatcatgttagttatcgtaatagtgtttttatgtgttatttattatacattatttttgaattgga 21207585  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 36312830 - 36312914
Alignment:
Q  121 aataggagtatagcagctgctattgcaacaccaatccatatccacatgcttttacctgcattgactatacactataaatttgaat 205  Q
    |||| ||||| ||||| ||| |||||| || | || ||||||||  |  ||||||||||||||||||||||| || |||||||||    
T  36312830 aatatgagtaaagcagttgcgattgcagcagctattcatatccatctttttttacctgcattgactatacacaattaatttgaat 36312914  T

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