View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_low_18 (Length: 344)
Name: NF19550_low_18
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 12888388 - 12888706
Alignment:
| Q |
18 |
aaatattggcattgacataccaaaaattgattcctaacaaccaaacaatataaacccttaaacatcttcatgtttaccctttataaaccctcttttattc |
117 |
Q |
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| T |
12888388 |
aaatattggcattgacataccaaaaattgattcctaacaaccaaacaatataaacccttaaacatcttcatgtttaccctttataaaccctcttttattc |
12888487 |
T |
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| Q |
118 |
attcaattatttttccttattaaaaagattattgactaaatgatnnnnnnnnn--tggaaagaaagaaggtgaataataataatgcttacaaggtcatga |
215 |
Q |
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| T |
12888488 |
attcaattatttttccttattaaaaagattattgactaaatgataaaaaaaaaaatggaaagaaagaaggtgaataataataatgcttacaaggtcatga |
12888587 |
T |
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| Q |
216 |
tcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccatagtgaacaccgttgctgtgttgttgttgttgaa |
315 |
Q |
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| T |
12888588 |
tcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccatagtgaagaccgttgctgtgttgttgttgttgaa |
12888687 |
T |
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| Q |
316 |
atgacattgttgctctgtg |
334 |
Q |
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|||||||||||||| |||| |
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| T |
12888688 |
atgacattgttgctttgtg |
12888706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 12904782 - 12904868
Alignment:
| Q |
197 |
aatgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccata |
283 |
Q |
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| T |
12904782 |
aatgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcactcccacgtccata |
12904868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 12876622 - 12876531
Alignment:
| Q |
198 |
atgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccatagtgaac |
289 |
Q |
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| T |
12876622 |
atgcttactagctcttgatcttgcaactcacgaagttgaatagttcggtagaaatgcattcccttagcatcacttccacggccatagtgaac |
12876531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 12895395 - 12895442
Alignment:
| Q |
18 |
aaatattggcattgacataccaaaaattgattcctaacaaccaaacaa |
65 |
Q |
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| T |
12895395 |
aaatattggcattgacataccaaaaatttagtcctaacaaccaaacaa |
12895442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 12895503 - 12895561
Alignment:
| Q |
77 |
aaacatcttcatgtttaccctttataaaccctcttttattcattcaattatttttcctt |
135 |
Q |
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| T |
12895503 |
aaacatattcatgtttaccctttataagctctattttattcattctattatttttcctt |
12895561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 12924903 - 12924965
Alignment:
| Q |
197 |
aatgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattcc |
259 |
Q |
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| T |
12924903 |
aatgcttacaagttcatcatcttgcaactcacgaagttgaatggttagataaaaatgcattcc |
12924965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 12895803 - 12895847
Alignment:
| Q |
77 |
aaacatcttcatgt--ttaccctttataaaccctcttttattcat |
119 |
Q |
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| T |
12895803 |
aaacatcttcatgtaattaccctttataaaccctcttttattcat |
12895847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 12929833 - 12929873
Alignment:
| Q |
242 |
tagataaaaatgcattccatgagcttcacttccacgcccat |
282 |
Q |
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| T |
12929833 |
tagataaaaatgcattccatgatcttcactgccacgcccat |
12929873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 290
Target Start/End: Complemental strand, 21114023 - 21113932
Alignment:
| Q |
199 |
tgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccatagtgaaca |
290 |
Q |
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| T |
21114023 |
tgcttacaaggtcttgatcatgcatctggagaaattgaatagttagatagaaatgcattcccttagcttcactcccacgcccattgtgaaca |
21113932 |
T |
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