View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_low_20 (Length: 331)
Name: NF19550_low_20
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 11369048 - 11368733
Alignment:
| Q |
1 |
tacgactatctaattttgttatccagtggttaaaaagagtggcagactgaaacttagctttggtgaggatgaaagttagcaatgaacccgacgtccaatc |
100 |
Q |
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| T |
11369048 |
tacgactatctaattttgttatccagtggttaaaaagagtggcagactgaaacttagctttggtgaggatgaaagttagcaatgaacccgacgtccaatc |
11368949 |
T |
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| Q |
101 |
atttatgatcattcataaagagagcgg-tcaaacaactaatttttaaaaactgaaataagaaatcttgcattgctaattttaacctacatccaatccttt |
199 |
Q |
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| T |
11368948 |
atttatgatcattcataaagagggcggatcaaacaactaatttttaaaaactgaaataagaaatcttgcattgctaattttaacctacatccaatccttt |
11368849 |
T |
|
| Q |
200 |
attatcattcacattgaacagggtagacaaaacaaaaacttaatcattgcaacttaccataataaacattgaacttggagaccaaagttatgaagaaatt |
299 |
Q |
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| T |
11368848 |
attatcattcacattgaacagggtagacaaaacaaaaacttaatcattgtaacttaccataataaacattgagcttggagaccaaagttatgaagaaatt |
11368749 |
T |
|
| Q |
300 |
cacgtaatcttcaatt |
315 |
Q |
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|||||||||||||||| |
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| T |
11368748 |
cacgtaatcttcaatt |
11368733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11369113 - 11369062
Alignment:
| Q |
1 |
tacgactatctaattttgttatccagtggttaaaaagagtggcagactgaaa |
52 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
11369113 |
tacgactatctaattttgttatctagtggttagaaagagtggcagactgaaa |
11369062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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