View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_low_22 (Length: 318)
Name: NF19550_low_22
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 82 - 308
Target Start/End: Original strand, 12888783 - 12889012
Alignment:
| Q |
82 |
ttagctttgcttctgtggtcgaacttgaagaagttaaaatagaa-gtacaccaaaccaaa---tattagatttgagtttgacaagtctttctaggcatca |
177 |
Q |
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| T |
12888783 |
ttagctttgcttatgtggtagaacttgaagaagttagaatagaaagtacaccaaaccaaaagatattagatttgagtttgacaagtctttctaggcatca |
12888882 |
T |
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| Q |
178 |
tgtgacgtgtagaaaatacgaaaatgcagaaaaaagcctgtccaatccagctctttattttgaaaggatcccttcaagaaaccggttttattacaagtta |
277 |
Q |
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| T |
12888883 |
tgtgacatgtagaaaatacgaaaatgcagaaaa-agcctgtccaatccagctctttattttgaaaggatcccttcaagaaaccggttttattacaagtta |
12888981 |
T |
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| Q |
278 |
ttgccataccaagcataactgtgtgtctgtg |
308 |
Q |
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| T |
12888982 |
ttgccataccaagcataactgtgtatctgtg |
12889012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 12891277 - 12891352
Alignment:
| Q |
223 |
tccagctctttattttgaaaggatcccttcaagaaaccggttttattacaagttattgccataccaagcataactg |
298 |
Q |
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| T |
12891277 |
tccagctctttattttgaaaggatcccttgaatgaaccggttttaatacaagttattgccttaacaagcataactg |
12891352 |
T |
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