View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19550_low_24 (Length: 295)
Name: NF19550_low_24
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_low_24 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 2011710 - 2011987
Alignment:
| Q |
1 |
aatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2011710 |
aatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
2011809 |
T |
|
| Q |
101 |
gcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2011810 |
gcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccca |
2011909 |
T |
|
| Q |
201 |
tttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2011910 |
tttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgt |
2011987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 1964984 - 1964707
Alignment:
| Q |
1 |
aatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1964984 |
aatttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
1964885 |
T |
|
| Q |
101 |
gcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccca |
200 |
Q |
| |
|
|||||| |||||| ||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
1964884 |
gcatcacggtcagaacatgttactgtatcgatgatgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtccca |
1964785 |
T |
|
| Q |
201 |
tttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1964784 |
tttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgt |
1964707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 1968920 - 1968643
Alignment:
| Q |
1 |
aatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| || ||||| || ||||| | |||||||||||| |||||| |
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|
| T |
1968920 |
aatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccatta |
1968821 |
T |
|
| Q |
101 |
gcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccca |
200 |
Q |
| |
|
||||||||| | |||| |||| |||| ||||| || |||||||||||||| || | ||||||| ||||||| |||||| ||| |||| |||||||||||| |
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|
| T |
1968820 |
gcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggtccca |
1968721 |
T |
|
| Q |
201 |
tttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgt |
278 |
Q |
| |
|
| |||| ||| | |||||||||||||| |||||||||||||||||||||| ||||| | || | ||||||||||||| |
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|
| T |
1968720 |
tctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgt |
1968643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 2004715 - 2004964
Alignment:
| Q |
1 |
aatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||| ||| ||||| || ||||||| ||||| ||||| |||| | |
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|
| T |
2004715 |
aatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgtttatccaaccatgttagacattccaacccatga |
2004814 |
T |
|
| Q |
101 |
gcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccca |
200 |
Q |
| |
|
| ||||| | |||| | || ||| |||||||||||||||||||||| |||| |||||| |||||||||| ||| ||| |||| ||||||| |||| |
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|
| T |
2004815 |
ttagcatcaccggaactttctatcgtcgggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggaccca |
2004914 |
T |
|
| Q |
201 |
tttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaa |
250 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2004915 |
tctccatttctaggaagctattaacaagaacaccatcagcaaaacttaaa |
2004964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 2008095 - 2008372
Alignment:
| Q |
1 |
aatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
100 |
Q |
| |
|
|||||| || |||||||||||||| ||||| || ||||| ||||||||||| ||||||| ||| ||||| || ||||| | |||||||||||| |||||| |
|
|
| T |
2008095 |
aatttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgtttatccaaccaggccagacactccaagccatta |
2008194 |
T |
|
| Q |
101 |
gcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccca |
200 |
Q |
| |
|
||||||||| |||| |||| |||| | ||| || |||||||||||||| || | ||||||| ||| ||| |||||| ||| |||| ||| ||| |||| |
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|
| T |
2008195 |
gcatcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggaccca |
2008294 |
T |
|
| Q |
201 |
tttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgt |
278 |
Q |
| |
|
| || ||||||| |||||||||||||||||||||||||||| |||||||| ||||||| | | ||||||||||||| |
|
|
| T |
2008295 |
tctctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgt |
2008372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 2433163 - 2432965
Alignment:
| Q |
47 |
aaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccattagcatcatcaacagaacctgttactgtctggatgatgggtccaacag |
146 |
Q |
| |
|
|||||||| |||| |||||| | || |||||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
2433163 |
aaaactgagcaaggttgttggtcatccaaccatgacagacactccaacatattagcatcatcgtcagaacttgttattgtctggatgatgggtccaacag |
2433064 |
T |
|
| Q |
147 |
gatagacagaagggttgccacttccttcctctgtcaatgcatttataggtcccatttccatttctaagaagctattaacaagaacaccatcagcaaaac |
245 |
Q |
| |
|
|||| ||| ||| || |||||||||| ||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2433063 |
gatacacaagaggattttcacttccttcatctgtcagtgcttttataggacccctttccatttctaagaagctattaacaagaacaccatcaacaaaac |
2432965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1963320 - 1963083
Alignment:
| Q |
1 |
aatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
100 |
Q |
| |
|
||||||||| || |||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||| || |||| |
|
|
| T |
1963320 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacattgtttgtccaaccatgtcagacactcaaacttatta |
1963221 |
T |
|
| Q |
101 |
gcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccca |
200 |
Q |
| |
|
||||||||| |||| ||||| ||| ||||| ||||||||||||| ||| ||| | |||| |||||||||| ||||||| ||| | |||||| ||| |
|
|
| T |
1963220 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctataggaccct |
1963121 |
T |
|
| Q |
201 |
tttccatttctaagaagctattaacaagaacaccatca |
238 |
Q |
| |
|
|||| ||||| | ||||||||||| ||||||||||||| |
|
|
| T |
1963120 |
tttcaatttccaggaagctattaataagaacaccatca |
1963083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2015109 - 2015346
Alignment:
| Q |
1 |
aatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
100 |
Q |
| |
|
||||||||| || |||||||| |||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||| |||||| || || |||| |
|
|
| T |
2015109 |
aatttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttgtccaaccatgccagacattcaaacttatta |
2015208 |
T |
|
| Q |
101 |
gcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccca |
200 |
Q |
| |
|
||||||||| |||| ||||| ||| ||||| ||||||||||||| ||| ||| | |||| |||||||||| ||||||| ||| | |||||| || |
|
|
| T |
2015209 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcagtgcttctataggaccgt |
2015308 |
T |
|
| Q |
201 |
tttccatttctaagaagctattaacaagaacaccatca |
238 |
Q |
| |
|
|||| ||||||| ||| ||||||| ||||| ||||||| |
|
|
| T |
2015309 |
tttcgatttctatgaaactattaataagaataccatca |
2015346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2018492 - 2018729
Alignment:
| Q |
1 |
aatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
100 |
Q |
| |
|
||||||||| || |||||||| |||||||| || ||||| ||||||||||||||||||| ||| |||||||| ||||||| |||||||| ||| |||||| |
|
|
| T |
2018492 |
aatttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttgtccaaccatgccagacacttcaacccatta |
2018591 |
T |
|
| Q |
101 |
gcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccca |
200 |
Q |
| |
|
|||||||| | || ||| || ||||| || |||||||||| ||| ||| |||||||||||||| || ||||| | ||| | |||||| || |
|
|
| T |
2018592 |
tcatcatcacccgatttggttggcgtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttctataggacctt |
2018691 |
T |
|
| Q |
201 |
tttccatttctaagaagctattaacaagaacaccatca |
238 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
2018692 |
tttcaatttctaggaagctattaataagaataccatca |
2018729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5902493 - 5902276
Alignment:
| Q |
1 |
aatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
100 |
Q |
| |
|
||||||||| |||||||||| ||||||||| || ||||| ||||||||||||||||||| ||||||||| | |||||||| ||||||||||| |||||| |
|
|
| T |
5902493 |
aatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgtttatgtaaccatgtcagacactccataccatt- |
5902395 |
T |
|
| Q |
101 |
gcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccca |
200 |
Q |
| |
|
|| | |||| ||||| ||| ||||| |||||||||| ||| || |||| |||||| ||||||||||| ||||||| ||| | |||||| || |
|
|
| T |
5902394 |
-----attaccagattctgttcttgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctataggacctt |
5902300 |
T |
|
| Q |
201 |
tttccatttctaagaagctattaa |
224 |
Q |
| |
|
|||| ||||| | ||||||||||| |
|
|
| T |
5902299 |
tttcaatttccaggaagctattaa |
5902276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 5905975 - 5905879
Alignment:
| Q |
3 |
tttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatt |
99 |
Q |
| |
|
||||||| |||||||||| |||||| || || ||||| ||||||||||||||||||| || ||||| |||||||||| || |||||||| |||||| |
|
|
| T |
5905975 |
tttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactgaacaaggctgctgtttatctaaccatgtcaaacactccataccatt |
5905879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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