View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_low_25 (Length: 272)
Name: NF19550_low_25
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_low_25 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 20065458 - 20065193
Alignment:
| Q |
9 |
gaaaagaatcattttacaataatcaatttatactttatataattattgacttttagaaaggtactgataaactattttatgttaatatttaaaatttgaa |
108 |
Q |
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| T |
20065458 |
gaaaagaatcattttacaataatcaatttatactttatataattattgacttttagaaaggtactgataaactattttatgttaatatttaaaatttgaa |
20065359 |
T |
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| Q |
109 |
tgattcaaagttatagttttacaaaaaataaaacaactgatattatcttatcaattatgtgag--acacctgcctaaggcaagtttgaatacataaatga |
206 |
Q |
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| T |
20065358 |
tgattcaaagttatagttttacaaaaaataaaacaactgatattatcttaacaattatgtgagacacacctgcctaaggcaagtttgaatacataaatga |
20065259 |
T |
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| Q |
207 |
aaaagacagtccaacttgatttcatgaaataaaaaacacagtcaagaaaatgtctcaaacaaccat |
272 |
Q |
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| T |
20065258 |
aaaagacagtccaacttgatttcatgaaataaaaaatacagtcaagaaaatgtctcaaacaaccat |
20065193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 261
Target Start/End: Original strand, 20301031 - 20301210
Alignment:
| Q |
70 |
tactgataaactattttatgttaatatt-taaaatttgaatgattcaaagttatagttttacaaaaaataaaacaactgatattatcttatcaattatgt |
168 |
Q |
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| T |
20301031 |
tactgataaactatttaatgttattagtctaaaaaatgaatgattcaaagttatag------aaagaattagacaacttttattatcttatcaatttcct |
20301124 |
T |
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| Q |
169 |
gagacacctgcctaaggcaagtttgaatacataaatgaaaaagacagtccaacttgatttcatgaaataaaaaacacagtcaagaaaatgtct |
261 |
Q |
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| T |
20301125 |
gagacac-------agtcaaatgtgaatacagaaatgaaaaagacagtccaagttgatttcatgaaataaaaaacacagtcagggaaatgtct |
20301210 |
T |
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