View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_low_26 (Length: 268)
Name: NF19550_low_26
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 36941380 - 36941633
Alignment:
| Q |
1 |
cacaaatcataaaactatatgaaaggaaaatgttatacaaagtctaccattaagattaaacgtgtaatttccatgtgtttttaagcaaaatctgaagtaa |
100 |
Q |
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| T |
36941380 |
cacaaatcataaaactatatgaaaggaaaatgttatacaaagtctaccgttaagattaaacgtgtaatttccatgtgtttttaagcaaaatctgaagtaa |
36941479 |
T |
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| Q |
101 |
aaacaacaatgataaaaactcacatgctcaacacttatagcatatttgggattgcttttgcataatccaaatgacatgaaaaacaaatga--agaatatg |
198 |
Q |
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| T |
36941480 |
aaacaacaatgataaaaactcacatgctcaacacttatagcatatttgggattgcttttgcataatccaaatgacatgaaaaacaaatgaagagaatatg |
36941579 |
T |
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| Q |
199 |
tagtgaaattgctttaattgatagagtttcttctgacccccacaaactactact |
252 |
Q |
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| T |
36941580 |
cagtgaaattgctttaattgatagagtttcttctgacccccacaaactactact |
36941633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 60 - 252
Target Start/End: Original strand, 36944577 - 36944768
Alignment:
| Q |
60 |
acgtgtaatttccatgtgtttttaagcaaaatctgaagtaaaaacaacaatgataaaaactcacatgctcaacacttatagcatatttgggattgctttt |
159 |
Q |
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| T |
36944577 |
acgtgtaatttccatatgtttttaagcaaaatctgaagtaataacaagaatgataaaaactcacatgctcatcacttatagcatatttgggattgctttt |
36944676 |
T |
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| Q |
160 |
gcataatccaaatgacatgaaaaacaaatgaagaatatgtagtgaaattgctttaattgatagagtttcttctgacccccacaaactactact |
252 |
Q |
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| T |
36944677 |
gcataatccaaatcacatgaaaaacaaataaagaatatgaagtgaagttgatttaattgatagagtttcttct-aaccccacaaactactact |
36944768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 33629543 - 33629583
Alignment:
| Q |
56 |
ttaaacgtgtaatttccatgtgtttttaagcaaaatctgaa |
96 |
Q |
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| T |
33629543 |
ttaaatgtgtaatttccatgtgttttcaagcaaaatctgaa |
33629583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 56061751 - 56061808
Alignment:
| Q |
56 |
ttaaacgtgtaatttccatgtgtttttaagcaaaatctgaagtaaaaacaacaatgat |
113 |
Q |
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| T |
56061751 |
ttaaatgtgaaatttctatatgtttttaagcaaaaactgaagtgaaaacaacattgat |
56061808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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