View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19550_low_27 (Length: 255)
Name: NF19550_low_27
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 13912456 - 13912695
Alignment:
| Q |
1 |
tttaaactattttcgagttcattcagttcattctcagctctattagacaccaaaatggatataagcaagtgatttggttcaagcgtttgttttagaagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13912456 |
tttaaactattttcgagttcattcagttcattctcagctctattagacaccaaaatggatataagcaagtgatttggttcaagcgtttgttttagaagga |
13912555 |
T |
|
| Q |
101 |
taaattgttcgaagaaagaactcgtaattaaattttgattgaaacaatcattcgttagatttaccaaaagatttattgtgac-nnnnnnnnnnnctaaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13912556 |
taaattgttcgaagaaagaactcgtaattaaattttgattgaaacaatcattcgttagatttaccaaaagatttattgtgacaaaaaaaaaaaactaaaa |
13912655 |
T |
|
| Q |
200 |
ttgatatatattattttcatttttaacatctccaattttt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13912656 |
ttgatatatattattttcatttttaacatctccaattttt |
13912695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 14320282 - 14320046
Alignment:
| Q |
4 |
aaactattttcgagttcattcagttcattctcagctctattagacaccaaaatggatataagcaagtgatttggttcaagcgtttgttttagaaggataa |
103 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14320282 |
aaactattttcgagttgattcagttctttctcagctctattagacaccaaaatggatataagcaagtgatttggttcaagcgtttgttttagaaggataa |
14320183 |
T |
|
| Q |
104 |
attgttcgaagaaagaactcgtaattaaattttgattgaaacaatcattcgttagatttaccaaaagatttattgtgac-nnnnnnnnnnnctaaaattg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14320182 |
attgttcgaagaaagaactcgtaattaaattttgactgaaataatcattcgttagatttaccaaaagatttattgtgacaaaaaagaaaaactaaaattg |
14320083 |
T |
|
| Q |
203 |
atatatattattttcatttttaacatctccaattttt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14320082 |
atatatattattttcatttttaacatctccaattttt |
14320046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University