View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19550_low_3 (Length: 558)
Name: NF19550_low_3
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19550_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 18 - 548
Target Start/End: Complemental strand, 37808517 - 37807986
Alignment:
| Q |
18 |
agaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatttaacaacttcaataacaacaattttggtaaacaaaata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37808517 |
agaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatttaacaacttcaataacaacaattttggtaaacaaaata |
37808418 |
T |
|
| Q |
118 |
gttcatgttgagcatttacggcatatgcattgactaacaatgtatatgaattaaattcttaaatttgtacgagcataccgaataagccatagtgagaagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37808417 |
gttcatgttgagcatttacggcatatgcattgactaacaatgtatatgaattaaattcttaaatttgtacgagcataccgaataagccatagtgagaagc |
37808318 |
T |
|
| Q |
218 |
ctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggcttgaactgctcccattgagcacatcaatgctgagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37808317 |
ctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggcttgaactgctcccattgagcacatcaatgctgagc |
37808218 |
T |
|
| Q |
318 |
atgaatgatggcatggatattcttcattcaacttagcctgtaaagctcaaacatcatattcacataaaatattcgaccttaa-taaggaatatggatata |
416 |
Q |
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| T |
37808217 |
atgaatgatggaatggatattcttcattcaacttagcctgtaaacctcaaacatcatattcacaaaaaatattcgaccttaattaaggaatatggatata |
37808118 |
T |
|
| Q |
417 |
actaattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgt |
516 |
Q |
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| T |
37808117 |
actaattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgt |
37808018 |
T |
|
| Q |
517 |
tttggatccataagcccattttggttcctatg |
548 |
Q |
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| T |
37808017 |
tttggatccataagcccattttggttcctatg |
37807986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 185 - 357
Target Start/End: Complemental strand, 37782973 - 37782801
Alignment:
| Q |
185 |
tacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggctt |
284 |
Q |
| |
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|||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
37782973 |
tacgagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggctt |
37782874 |
T |
|
| Q |
285 |
gaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcctg |
357 |
Q |
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||| ||| |||||| ||||| ||||||||||||||||| || |||| |||||||||||||||||||||| |
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| T |
37782873 |
gaatcgctgccattgtgcacaccaatgctgagcatgaattgtgttctggaaattcttcattcaacttagcctg |
37782801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 177 - 347
Target Start/End: Complemental strand, 37792331 - 37792161
Alignment:
| Q |
177 |
taaatttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaac |
276 |
Q |
| |
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|||| ||||| ||||||||||||||||| | ||||||| ||||||| |||||| |||||||||| |||| |||| || || ||||||| ||||| ||| |
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| T |
37792331 |
taaagttgtatgagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaac |
37792232 |
T |
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| Q |
277 |
aatggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattca |
347 |
Q |
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| T |
37792231 |
gatggcttgaattgctcccattgtcgacatcaaagcagtgcttgagtgatggcttggatattctttattca |
37792161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 188 - 356
Target Start/End: Complemental strand, 37802012 - 37801844
Alignment:
| Q |
188 |
gagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggcttgaa |
287 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||| |||||| |||||||||| |||| |||| || || ||||||| ||||| ||| |||||||||| |
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| T |
37802012 |
gagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatggcttgaa |
37801913 |
T |
|
| Q |
288 |
ctgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcct |
356 |
Q |
| |
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||||||||||| ||||||| || | || ||| ||||||| ||||||||||| ||||| ||||||| |
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| T |
37801912 |
ttgctcccattgtcgacatcaaagcagtgcttgagtgatggcttggatattctttattcattttagcct |
37801844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 543
Target Start/End: Complemental strand, 37800756 - 37800634
Alignment:
| Q |
421 |
attaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgttttg |
520 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||||| |||| |||| |||| |||||| |||| |||| || |||||||| ||||| ||||| | |
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| T |
37800756 |
attaagctaacctgaatgataaaccatagagaaaaaaagcagctgcttcctatagcacatagaacgcccaatagtttattactaaagtctgcatgttgcg |
37800657 |
T |
|
| Q |
521 |
gatccataagcccattttggttc |
543 |
Q |
| |
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| |||||| |||||||||||||| |
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| T |
37800656 |
gctccatatgcccattttggttc |
37800634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 490
Target Start/End: Complemental strand, 37781479 - 37781415
Alignment:
| Q |
426 |
gctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacaccca |
490 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||| ||| |||| |||||||||| ||||| |
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|
| T |
37781479 |
gctaacctggataattaaccacaaagaaaaagagcaacaacttcctatggcacatggaataccca |
37781415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 543
Target Start/End: Complemental strand, 37789917 - 37789794
Alignment:
| Q |
420 |
aattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgtttt |
519 |
Q |
| |
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||||||||||||||| ||||| ||||| | |||||||||||| |||| |||| ||| || ||| |||| || |||||||||||||| ||||| | |
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| T |
37789917 |
aattaagctaacctgaatgataaaccaaagagaaaaagagcagctgcttcctatggcatatagaaatcccaatagtttattactgaagtctgcatgttgt |
37789818 |
T |
|
| Q |
520 |
ggatccataagcccattttggttc |
543 |
Q |
| |
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| |||||| |||||||||||||| |
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| T |
37789817 |
agttccatatgcccattttggttc |
37789794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 37783273 - 37783204
Alignment:
| Q |
18 |
agaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatttaacaact |
87 |
Q |
| |
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||||||||||| || |||| | |||||| | ||||| ||||||| |||||||||| | |||||||||||| |
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| T |
37783273 |
agaaataacaacaatcactaatccagaggctacaattccctgcaataacattcacttgcatttaacaact |
37783204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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