View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19550_low_6 (Length: 488)

Name: NF19550_low_6
Description: NF19550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19550_low_6
NF19550_low_6
[»] chr5 (3 HSPs)
chr5 (166-476)||(36735118-36735428)
chr5 (23-97)||(36735499-36735573)
chr5 (255-400)||(36738118-36738263)
[»] chr3 (12 HSPs)
chr3 (202-342)||(22795675-22795815)
chr3 (208-342)||(22790400-22790534)
chr3 (208-342)||(22822871-22823005)
chr3 (208-342)||(22824640-22824774)
chr3 (202-327)||(22784249-22784374)
chr3 (202-327)||(22788613-22788738)
chr3 (202-342)||(22786027-22786167)
chr3 (202-342)||(22793916-22794056)
chr3 (208-342)||(22826408-22826542)
chr3 (287-342)||(22793802-22793857)
chr3 (256-358)||(22784083-22784187)
chr3 (256-358)||(22788447-22788551)
[»] chr8 (3 HSPs)
chr8 (202-327)||(5613153-5613278)
chr8 (202-342)||(5611360-5611500)
chr8 (256-358)||(5613340-5613444)
[»] chr6 (1 HSPs)
chr6 (293-341)||(4038759-4038807)


Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 166 - 476
Target Start/End: Complemental strand, 36735428 - 36735118
Alignment:
Q  166 gccaacaatgtgtcgagtgaaggcaaaaccaagtgcaacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaatt 265  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36735428 gccaacgatgtgtcgagtgaaggcaaaaccaagtgcaacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaatt 36735329  T
Q  266 cgagacccatggagaaaaccatatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccacttcataccgtggga 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36735328 cgagacccatggagaaaaccatatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccacttcataccgtggga 36735229  T
Q  366 acaatgccataacaaacttcccaataccttacaatgccgcgaacagtgttgttgaagcatctagggttgctgttggttcttcttcaaccgttgtttctag 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36735228 acaatgccataacaaacttcccaataccttacaatgccgcgaacagtgttgttgaagcatctagggttgctgttggttcttcttcaaccgttgtttctag 36735129  T
Q  466 ggttcctgttg 476  Q
    |||||||||||    
T  36735128 ggttcctgttg 36735118  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 36735573 - 36735499
Alignment:
Q  23 taaactgatattctttttgttgttagagtcggtatgttgagaaatgatatttatatctccctccttcataagcga 97  Q
    ||||| ||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  36735573 taaacagatattctttttgttgacagagaaggtatgttgagaaatgatatttatatctccctctttcataagcga 36735499  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 400
Target Start/End: Complemental strand, 36738263 - 36738118
Alignment:
Q  255 gtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccacttc 354  Q
    ||||| |||||||| |||| |||| ||||| || || ||||||||||||||   |||| || || |||||||| | |||||| |||||  |||| | |||    
T  36738263 gtgcagaaattcgaaacccctggaaaaaacaatgtgaatggttaggcacttacaatactgcagagcaagcagcccgagcttacgatgcagcagctatttc 36738164  T
Q  355 ataccgtgggaacaatgccataacaaacttcccaataccttacaat 400  Q
    || |||||||  ||||||||| ||||||||||||||||||||||||    
T  36738163 attccgtggggtcaatgccattacaaacttcccaataccttacaat 36738118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 342
Target Start/End: Complemental strand, 22795815 - 22795675
Alignment:
Q  202 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 301  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||  |  |  ||||  ||||| ||||||||||||||||| | |||||||| |||||     
T  22795815 aacgaaggaaattcgttactgaggcgtgaggaagacaaaatatggcagatacggtgcggaaatttgagacccatggagaaaagcttatgtatgattagga 22795716  T
Q  302 acttttgatacagctgaacaagcagctcaagcttatgatgc 342  Q
    |||| ||||| |||||| |||||||| || ||||| |||||    
T  22795715 acttatgatagagctgatcaagcagcacaggcttacgatgc 22795675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 342
Target Start/End: Complemental strand, 22790534 - 22790400
Alignment:
Q  208 ggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcactttt 307  Q
    |||||||||||||||  ||||||||||||||||| ||||  |  || ||||  ||||| |||||||||||| |||| | | ||||| ||||| ||||| |    
T  22790534 ggaaattcgttaccgaggcgtgaggaagacaaaaaatggcagatatggtgcggaaatttgagacccatggaaaaaagcttctgtatagttagacacttat 22790435  T
Q  308 gatacagctgaacaagcagctcaagcttatgatgc 342  Q
    |||| ||||||||||||||| | |||||| |||||    
T  22790434 gatagagctgaacaagcagcacgagcttacgatgc 22790400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 342
Target Start/End: Complemental strand, 22823005 - 22822871
Alignment:
Q  208 ggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcactttt 307  Q
    |||||||||||||||  ||||||||||||||||| ||||  |  || ||||  ||||| |||||||||||| |||| | | ||||| ||||| ||||| |    
T  22823005 ggaaattcgttaccgaggcgtgaggaagacaaaaaatggcagatatggtgcggaaatttgagacccatggaaaaaagcttctgtatagttagacacttat 22822906  T
Q  308 gatacagctgaacaagcagctcaagcttatgatgc 342  Q
    |||| ||||||||||||||| | |||||| |||||    
T  22822905 gatagagctgaacaagcagcacgagcttacgatgc 22822871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 342
Target Start/End: Complemental strand, 22824774 - 22824640
Alignment:
Q  208 ggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcactttt 307  Q
    |||||||||||||||  ||||||||||||||||| ||||  |  || ||||  ||||| |||||||||||| |||| | | ||||| ||||| ||||| |    
T  22824774 ggaaattcgttaccgaggcgtgaggaagacaaaaaatggcagatatggtgcggaaatttgagacccatggaaaaaagcttctgtatagttagacacttat 22824675  T
Q  308 gatacagctgaacaagcagctcaagcttatgatgc 342  Q
    |||| ||||||||||||||| | |||||| |||||    
T  22824674 gatagagctgaacaagcagcacgagcttacgatgc 22824640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 327
Target Start/End: Complemental strand, 22784374 - 22784249
Alignment:
Q  202 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 301  Q
    |||||||||||||||||||||  || |||||||||||||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| |||||     
T  22784374 aacgaaggaaattcgttaccgaggcttgaggaagacaaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattagga 22784275  T
Q  302 acttttgatacagctgaacaagcagc 327  Q
    |||| ||||| |||||||||||||||    
T  22784274 acttatgataaagctgaacaagcagc 22784249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 327
Target Start/End: Complemental strand, 22788738 - 22788613
Alignment:
Q  202 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 301  Q
    |||||||||||||||||||||  || |||||||||||||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| |||||     
T  22788738 aacgaaggaaattcgttaccgaggcttgaggaagacaaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattagga 22788639  T
Q  302 acttttgatacagctgaacaagcagc 327  Q
    |||| ||||| |||||||||||||||    
T  22788638 acttatgataaagctgaacaagcagc 22788613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 342
Target Start/End: Complemental strand, 22786167 - 22786027
Alignment:
Q  202 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 301  Q
    |||||||||||||||||||||  ||||||||||||| ||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| |||||     
T  22786167 aacgaaggaaattcgttaccgaggcgtgaggaagacgaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattagga 22786068  T
Q  302 acttttgatacagctgaacaagcagctcaagcttatgatgc 342  Q
    |||| ||||| |||||| |||| ||| |||||||| |||||    
T  22786067 acttatgatagagctgatcaagtagcacaagcttacgatgc 22786027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 342
Target Start/End: Complemental strand, 22794056 - 22793916
Alignment:
Q  202 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 301  Q
    |||||||||||||||||||||  ||||||||||||| ||| ||||  |  |   |||  ||||| |||||| |||||||||| | |||||||  |||||     
T  22794056 aacgaaggaaattcgttaccgaggcgtgaggaagacgaaaaatggcagatacgatgcggaaatttgagaccgatggagaaaagcttatgtattattagga 22793957  T
Q  302 acttttgatacagctgaacaagcagctcaagcttatgatgc 342  Q
    |||| ||||| |||||| |||||||| |||||||| |||||    
T  22793956 acttatgatagagctgatcaagcagcacaagcttacgatgc 22793916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 342
Target Start/End: Complemental strand, 22826542 - 22826408
Alignment:
Q  208 ggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcactttt 307  Q
    ||||||||||||| |  ||||||||||||||||| ||||  |  || ||||  ||||| |||||||||||| |||| | | ||||| ||||| ||||| |    
T  22826542 ggaaattcgttactgaggcgtgaggaagacaaaaaatggcagatatggtgcggaaatttgagacccatggaaaaaagcttctgtatagttagacacttat 22826443  T
Q  308 gatacagctgaacaagcagctcaagcttatgatgc 342  Q
    |||| ||||||||||||| | | |||||| |||||    
T  22826442 gatagagctgaacaagcaacacgagcttacgatgc 22826408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 22793802 - 22793857
Alignment:
Q  287 tatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgc 342  Q
    |||||||||||| |||||| |||||| |||||||||||||| | ||||||||||||    
T  22793802 tatgtatggttatgcacttatgatacggctgaacaagcagcacgagcttatgatgc 22793857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 358
Target Start/End: Original strand, 22784083 - 22784187
Alignment:
Q  256 tgcaaaaattcgagacccatggagaaaac--catatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccactt 353  Q
    |||| |||||||| ||||||||| ||||   | |||||||||||| |||||| |||||| |||||||||||||| ||  |||| ||||| ||| ||| ||    
T  22784083 tgcagaaattcgaaacccatggaaaaaaatgcttatgtatggttatgcacttatgatacggctgaacaagcagcacacacttacgatgcaacaaccattt 22784182  T
Q  354 catac 358  Q
    |||||    
T  22784183 catac 22784187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 358
Target Start/End: Original strand, 22788447 - 22788551
Alignment:
Q  256 tgcaaaaattcgagacccatggagaaaac--catatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccactt 353  Q
    |||| |||||||| ||||||||| ||||   | |||||||||||| |||||| |||||| |||||||||||||| ||  |||| ||||| ||| ||| ||    
T  22788447 tgcagaaattcgaaacccatggaaaaaaatgcttatgtatggttatgcacttatgatacggctgaacaagcagcacacacttacgatgcaacaaccattt 22788546  T
Q  354 catac 358  Q
    |||||    
T  22788547 catac 22788551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 327
Target Start/End: Original strand, 5613153 - 5613278
Alignment:
Q  202 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 301  Q
    |||||||||||||||||||||  || |||||||||||||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| |||||     
T  5613153 aacgaaggaaattcgttaccgaggcttgaggaagacaaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattagga 5613252  T
Q  302 acttttgatacagctgaacaagcagc 327  Q
    |||| ||||| |||||||||||||||    
T  5613253 acttatgataaagctgaacaagcagc 5613278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 342
Target Start/End: Original strand, 5611360 - 5611500
Alignment:
Q  202 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 301  Q
    |||||||||||||||||||||  ||||||||||||| ||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| |||||     
T  5611360 aacgaaggaaattcgttaccgaggcgtgaggaagacgaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattagga 5611459  T
Q  302 acttttgatacagctgaacaagcagctcaagcttatgatgc 342  Q
    |||| ||||| |||||| |||| ||| |||||||| |||||    
T  5611460 acttatgatagagctgatcaagtagcacaagcttacgatgc 5611500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 358
Target Start/End: Complemental strand, 5613444 - 5613340
Alignment:
Q  256 tgcaaaaattcgagacccatggagaaaac--catatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccactt 353  Q
    |||| |||||||| ||||||||| ||||   | |||||||||||| |||||| |||||| |||||||||||||| ||  |||| ||||| ||| ||| ||    
T  5613444 tgcagaaattcgaaacccatggaaaaaaatgcttatgtatggttatgcacttatgatacggctgaacaagcagcacacacttacgatgcaacaaccattt 5613345  T
Q  354 catac 358  Q
    |||||    
T  5613344 catac 5613340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 4038759 - 4038807
Alignment:
Q  293 tggttaggcacttttgatacagctgaacaagcagctcaagcttatgatg 341  Q
    |||||||| |||||||||||||||||| |||| |||  |||||||||||    
T  4038759 tggttaggaacttttgatacagctgaagaagctgctagagcttatgatg 4038807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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