View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19551_high_9 (Length: 339)
Name: NF19551_high_9
Description: NF19551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19551_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 38870978 - 38870647
Alignment:
| Q |
1 |
cacagatagtacattactttgaaattttaatgtcattgtgttctatgacatggtcatgaaatcaccaactctaggtttcttttgggacttctcttgctac |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38870978 |
cacacatagtacattactttgaaattttaatgtcatcgtgttctatgacatggtcatgaaatcaccaactctaggtttcttttgggacttctcttgctac |
38870879 |
T |
|
| Q |
101 |
tccgatgaaaacatgacacttatcatcaaaaaggtattagactcctctaatggagtgtactttttgtttttcctagtaagtaaaaaggagggtacttttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38870878 |
tccgatgaaaacatgacacttatcatcaaaa-ggtattagactcctctaatggagtgtactttttgtttttcatagtaagtaaaaaggagggtacttttg |
38870780 |
T |
|
| Q |
201 |
actagaggataaaatgcaattacaattgattgagaatatatccattcatataagaattatgacagcaacacacattttttcccatacatactctttaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38870779 |
actagaggataaaatgcaattacaattgattgagaatatatccattgatataagaattatgacagcaacacacattttttcccatacatactctttaatt |
38870680 |
T |
|
| Q |
301 |
gattgaattttaattgaattccactaaactttt |
333 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
38870679 |
gattgaattttaattgaattccattaaactttt |
38870647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University