View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19551_low_11 (Length: 277)
Name: NF19551_low_11
Description: NF19551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19551_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 3919740 - 3919997
Alignment:
| Q |
15 |
agcattcttgtttatacaattgtggttgtcatgcaatggagtttgtatcctagaagcccttgctgaaagtggcgaggcctgttaaaatcatggcaaaacc |
114 |
Q |
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| T |
3919740 |
agcattcttgtttatacaattgtggttgtcatgcaatggagtttgtatcctagaagcccttgctgaaagtggcgaggcctgttaaaatcatggcaaaacc |
3919839 |
T |
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| Q |
115 |
aacaaatcgtttcaactcacattcagaaaacatccaaggccaacacagtgcatgtgtcataaaatcattgttttcacaatcttaaatatcacagtttaaa |
214 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3919840 |
aacgaatcgtttcaactcacattcagaaaacacccaaggccaacacagtgcatgtgtcataaaatcattgttttcacaatcttaaatatcacagtttaaa |
3919939 |
T |
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| Q |
215 |
agtaaaaactgcattatagaaagaactcaccagaaactcatcttggtctttccctatg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3919940 |
agtaaaaactgcattatagaaagaactcaccagaaactcatcttggtctttccctatg |
3919997 |
T |
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