View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19551_low_13 (Length: 250)

Name: NF19551_low_13
Description: NF19551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19551_low_13
NF19551_low_13
[»] chr1 (4 HSPs)
chr1 (1-242)||(8455285-8455526)
chr1 (14-239)||(43403650-43403874)
chr1 (14-232)||(48769984-48770196)
chr1 (26-83)||(9094802-9094859)
[»] scaffold0060 (1 HSPs)
scaffold0060 (14-218)||(19004-19208)
[»] chr2 (2 HSPs)
chr2 (14-239)||(40275225-40275450)
chr2 (192-236)||(38346587-38346631)
[»] chr5 (1 HSPs)
chr5 (14-232)||(18979956-18980173)
[»] chr8 (2 HSPs)
chr8 (14-239)||(26155365-26155583)
chr8 (14-242)||(19168264-19168513)
[»] chr4 (2 HSPs)
chr4 (68-242)||(3958749-3958928)
chr4 (14-232)||(1558138-1558355)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 8455285 - 8455526
Alignment:
Q  1 aacaataaaaggtagggcctgaaccctatacaaagagagaaaacacaagagaaaacaagccaaaactactcctaaaatgcaaaaatactactagcatcta 100  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  8455285 aacaataaaaggcagagcctgaaccctatacaaagagagaaaacacaagagaaaacgagccaaaactactcctaaaatgcaaagatactactagcatcta 8455384  T
Q  101 gcttaagctttgcttgtaatcaaaagaaacctgaactgctaaataaggaaaagcagccaagttcatcaacatatcgatcactatataagagaaagaccaa 200  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8455385 gcttaagcgttgcttgtaatcaaaagaaacctgaactgctaaacaaggaaaagcagccaagttcatcaacatatcgatcactatataagagaaagaccaa 8455484  T
Q  201 atatcaaaacaaacaaatctatcccactaagatagaattatc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8455485 atatcaaaacaaacaaatctatcccactaagatagaattatc 8455526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 43403650 - 43403874
Alignment:
Q  14 agggcctgaaccctatacaaagagagaaaacacaagagaaaacaagccaaaactactcctaaaatgcaaaaatactactagcatctagcttaagctttgc 113  Q
    ||||||||||||||||||||||||||||   |||||||||| ||| |||||||||||||||| ||||||| | ||  ||||||||||| ||||||| |||    
T  43403650 agggcctgaaccctatacaaagagagaacgtacaagagaaagcaaaccaaaactactcctaagatgcaaataaacatctagcatctagtttaagctgtgc 43403749  T
Q  114 ttgtaatcaaaagaaacctgaactgctaaataaggaaaagcagccaagttcatcaacatatcgatcactatataagagaaagaccaaatatcaaaacaaa 213  Q
    ||  ||||||||||||||| || ||||| | ||||||||||||||| ||||| ||||| | | | ||||| |  | ||||| |||||| ||||||||||     
T  43403750 ttaaaatcaaaagaaacctaaattgctatacaaggaaaagcagccatgttcaccaaca-aactagcactacaacatagaaataccaaaaatcaaaacaat 43403848  T
Q  214 caaatctatcccactaagatagaatt 239  Q
    ||||  ||||||||| ||| ||||||    
T  43403849 caaaaatatcccactgagaaagaatt 43403874  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 48770196 - 48769984
Alignment:
Q  14 agggcctgaaccctatacaaagagagaaaacacaagagaaaacaagccaaaactactcctaaaatgcaaaaatactactagcatctagcttaagctttgc 113  Q
    ||||||| |||||||||||||||||||| | |     ||||  ||||||||||||||||||| ||||||| | ||| ||||||||||  |||||||||||    
T  48770196 agggcctaaaccctatacaaagagagaacata-----gaaagtaagccaaaactactcctaagatgcaaagaaacttctagcatctaa-ttaagctttgc 48770103  T
Q  114 ttgtaatcaaaagaaacctgaactgctaaataaggaaaagcagccaagttcatcaacatatcgatcactatataagagaaagaccaaatatcaaaacaaa 213  Q
    || |||||||||||||||| | |||||||| ||||||| ||||||| | ||| ||||| ||| | ||||| | |||||||||| |||||||| ||||||     
T  48770102 ttttaatcaaaagaaacctaagctgctaaacaaggaaatgcagccatgatcaccaacaaatctaacactacaaaagagaaagatcaaatatctaaacaat 48770003  T
Q  214 caaatctatcccactaaga 232  Q
    ||||  |||||||||||||    
T  48770002 caaaaatatcccactaaga 48769984  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 9094859 - 9094802
Alignment:
Q  26 ctatacaaagagagaaaacacaagagaaaacaagccaaaactactcctaaaatgcaaa 83  Q
    ||||||||| |||||| |||||||| ||||||||||||||||  |||||| |||||||    
T  9094859 ctatacaaacagagaacacacaagaaaaaacaagccaaaacttttcctaagatgcaaa 9094802  T

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Target: scaffold0060 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 19208 - 19004
Alignment:
Q  14 agggcctgaaccctatacaaagagagaaaacacaagagaaaacaagccaaaactactcctaaaatgcaaaaatactactagcatctagcttaagctttgc 113  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19208 agggcctggaccctatacaaagagagaaaacacaagagaaaacaagccaaaactactcctaaaatgcaaagatactactagcatctagcttaagctttgc 19109  T
Q  114 ttgtaatcaaaagaaacctgaactgctaaataaggaaaagcagccaagttcatcaacatatcgatcactatataagagaaagaccaaatatcaaaacaaa 213  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||     
T  19108 ttgtaatcaaaagaaacctgaactgctaaacaatgaaaagcagccaagttcatcaacatatctagcactataaaagagaaagaccaaatatcaaaacaat 19009  T
Q  214 caaat 218  Q
    |||||    
T  19008 caaat 19004  T

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Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 40275450 - 40275225
Alignment:
Q  14 agggcctgaaccctatacaaagagagaaaacacaagagaaaacaagccaaaactactcctaaaatgcaaaaatactactagcatctagcttaagctttgc 113  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||||||| | ||| ||||||||||| |||||||||||    
T  40275450 agggcctgaaccctatacaaagagagaacatacaagagaaagcaagccaaaactactcctaagatgcaaagaaacttctagcatctagtttaagctttgc 40275351  T
Q  114 ttgtaatcaaaagaaacctgaactgctaaataaggaaaagcagccaagttcatcaacatatcgatcactatataagagaaagaccaaatatcaaaacaaa 213  Q
    ||  ||||||||||||||| | |||||||| ||||||||||||||| ||||| ||||||| | | ||||| |  |||||||||||||| ||||||||||     
T  40275350 ttaaaatcaaaagaaacctaagctgctaaacaaggaaaagcagccatgttcaccaacataactagcactacagcagagaaagaccaaaaatcaaaacaat 40275251  T
Q  214 caaatctatcccactaagatagaatt 239  Q
    ||||  ||||||||||||| ||||||    
T  40275250 caaaaatatcccactaagaaagaatt 40275225  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 38346587 - 38346631
Alignment:
Q  192 aaagaccaaatatcaaaacaaacaaatctatcccactaagataga 236  Q
    ||||||||||||||||||||| |  ||||||||||| ||||||||    
T  38346587 aaagaccaaatatcaaaacaatcctatctatcccaccaagataga 38346631  T

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Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 18980173 - 18979956
Alignment:
Q  14 agggcctgaaccctatacaaagagagaaaacacaagagaaaacaagccaaaactactcctaaaatgcaaaaatactactagcatctagcttaagctttgc 113  Q
    |||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||||||| | ||| ||||||||||| |||||||||||    
T  18980173 agggtctgaaccctatacaaagagagaacatacaagagaaagcaagccaaaactactcctaagatgcaaagaaacttctagcatctag-ttaagctttgc 18980075  T
Q  114 ttgtaatcaaaagaaacctgaactgctaaataaggaaaagcagccaagttcatcaacatatcgatcactatataagagaaagaccaaatatcaaaacaaa 213  Q
    || |||||||||||||||| | || ||||| ||||||| ||||||| | ||| ||||| ||| | ||||| | ||||||||||||||||||| ||||||     
T  18980074 ttttaatcaaaagaaacctaagctactaaacaaggaaatgcagccatgatcaccaacaaatctaacactacaaaagagaaagaccaaatatctaaacaat 18979975  T
Q  214 caaatctatcccactaaga 232  Q
    ||||  |||||||||||||    
T  18979974 caaaattatcccactaaga 18979956  T

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Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 26155583 - 26155365
Alignment:
Q  14 agggcctgaaccctatacaaagagagaaaacacaagagaaaacaagccaaaactactcctaaaatgcaaaaatactactagcatctagcttaagctttgc 113  Q
    ||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||||| |||||||   ||| ||||||||||| |||||||||||    
T  26155583 agggcctgaaccctatacaaagagagaacctacaagagaaagcaagccaaaactactcctaagatgcaaagtaacttctagcatctagattaagctttgc 26155484  T
Q  114 ttgtaatcaaaagaaacctgaactgctaaataaggaaaagcagccaagttcatcaacatatcgatcactatataagagaaagaccaaatatcaaaacaaa 213  Q
    || |||||||||||||||| | |||||||| ||||||| ||||||||||||| ||||| ||| | ||||| | |||||       ||||||||||||||     
T  26155483 ttttaatcaaaagaaacctaagctgctaaacaaggaaatgcagccaagttcaccaacacatctagcactaaaaaagag-------aaatatcaaaacaat 26155391  T
Q  214 caaatctatcccactaagatagaatt 239  Q
    ||||  ||||||||||||| ||||||    
T  26155390 caaaattatcccactaagaaagaatt 26155365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 19168513 - 19168264
Alignment:
Q  14 agggcctgaaccctatacaaagagagaaaacacaagagaaaacaagccaaaactactcctaaaatgcaaaaatactactagcatctagcttaagctttgc 113  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||| || ||||| ||||||||||| |||||||||||    
T  19168513 agggcatgaaccctatacaaagagagaaaacacaagaggaaacaagccaaaactattcctaagatgcgaagatacttctagcatctagattaagctttgc 19168414  T
Q  114 ttgtaatcaaaagaa---------------------acctgaactgctaaataaggaaaagcagccaagttcatcaacatatcgatcactatataagaga 192  Q
    |||||||||||||||                     |||| |||||||||| |||| || ||||||||||||| ||||||||| | ||||||| ||||||    
T  19168413 ttgtaatcaaaagaaacctaatatcaaaaaacagaaacctaaactgctaaacaagg-aatgcagccaagttcaccaacatatctagcactataaaagaga 19168315  T
Q  193 aagaccaaatatcaaaacaaa-caaatctatcccactaagatagaattatc 242  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||||||||    
T  19168314 aagaccaaatatcaaaaaaaatcaaatctatcacactaagatagaattatc 19168264  T

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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 242
Target Start/End: Original strand, 3958749 - 3958928
Alignment:
Q  68 actcctaaaatgcaaaaatactactagcatctagcttaagctttgcttgtaatcaaaagaaacctgaactgctaaataaggaaaagcagccaagttcatc 167  Q
    |||||||| ||||||| | ||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |    
T  3958749 actcctaagatgcaaagaaacttctagcatttagcttaagctttgcttgtaatcaaaagaaacctaaactgctaaacaaggaaatgcagccaagttcacc 3958848  T
Q  168 aacatatcgatcactatataagagaaagaccaaatat-----caaaacaaacaaatctatcccactaagatagaattatc 242  Q
    |||||||  | ||||||| ||||||||||||||||||     |||||||| ||||||||||| |||||||||||||||||    
T  3958849 aacatatttagcactataaaagagaaagaccaaatattgaaacaaaacaatcaaatctatccaactaagatagaattatc 3958928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 1558138 - 1558355
Alignment:
Q  14 agggcctgaaccctatacaaagagagaaaacacaagagaaaacaagccaaaactactcctaaaatgcaaaaatactactagcatctagcttaagctttgc 113  Q
    |||||||||||| |||||||||| |||| | |||||||||| |||||||||| ||||||||| ||||||| | ||| ||||||||||| |||||||||||    
T  1558138 agggcctgaaccttatacaaagaaagaacatacaagagaaagcaagccaaaattactcctaagatgcaaagaaacttctagcatctag-ttaagctttgc 1558236  T
Q  114 ttgtaatcaaaagaaacctgaactgctaaataaggaaaagcagccaagttcatcaacatatcgatcactatataagagaaagaccaaatatcaaaacaaa 213  Q
    || |||||||||||||||| | || ||||| ||||||| || |||| | ||| ||||| ||| | ||||| | ||||||||||||||||||| ||||||     
T  1558237 ttttaatcaaaagaaacctaagcttctaaacaaggaaatgctgccatgatcaccaacaaatctaacactacaaaagagaaagaccaaatatctaaacaat 1558336  T
Q  214 caaatctatcccactaaga 232  Q
    ||||  |||||||||||||    
T  1558337 caaaattatcccactaaga 1558355  T

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