View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19551_low_16 (Length: 238)
Name: NF19551_low_16
Description: NF19551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19551_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 38893478 - 38893689
Alignment:
| Q |
18 |
gagaggatgattcaaatttctcttactacttgttaatcacatagatgacaagtttaccactcacaccaacgaaatggcactgaaaagaagtattacacca |
117 |
Q |
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| T |
38893478 |
gagaggatgattcaaatgtctcttactacttgttaatcacataaatgacaagtttaccactcacaccaacgaaatggcactgaaaagaagtgttacacca |
38893577 |
T |
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| Q |
118 |
aaattaagtcgataataacagcacttaagcacctaaagaaataagtcgataatagaagtgaacatattacataagacaaaataatcatgtactatgaacc |
217 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
38893578 |
aaattaagtcgagaataacagcacttaagcacccaaagaaataagtcgataatagaagtga-------acataagacaaaataatcatgtactataaacc |
38893670 |
T |
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| Q |
218 |
aaatactttcaaaatttac |
236 |
Q |
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||||||||||||||||||| |
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| T |
38893671 |
aaatactttcaaaatttac |
38893689 |
T |
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