View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19551_low_18 (Length: 235)
Name: NF19551_low_18
Description: NF19551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19551_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 17227445 - 17227218
Alignment:
| Q |
1 |
ccatgcacttgtcctcttcatttcaacttcaacccactcctcttcactct-ttctccaaatttaattttattatcataccttagcaacattacaaaaaac |
99 |
Q |
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| T |
17227445 |
ccatgcacttgtcctcttcatt-caacttcaacccactcctcttcactctcttcgccaaatttaattttattatcataccttagcaacattacaaaaaac |
17227347 |
T |
|
| Q |
100 |
atataaccacttttatttatttctctcttaataaatactattcccttactctccatactcatttcacataacttctcttcactttcttcccttctttctc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17227346 |
atataaccacttttatttatttctctcttaataaatactattcccttactctccatactcatttcacataacttctcttcactttcttcccttctttctc |
17227247 |
T |
|
| Q |
200 |
tgacaaccaaccaacctcatttcatctct |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17227246 |
tgacaaccaaccaacctcatttcatctct |
17227218 |
T |
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