View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19551_low_19 (Length: 234)
Name: NF19551_low_19
Description: NF19551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19551_low_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 40762733 - 40762966
Alignment:
| Q |
1 |
ccggtaaccttcaagttatcgtggaagcttcacttgctgatcttggacaacttgttcttactggaacttgtgttgttgttgatggatatctaaaacttcc |
100 |
Q |
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| T |
40762733 |
ccggtaaccttcaagttatcgtggaagcttcgcttgctgatcttggacaacttgttcttactggaacttgtgttgttgttgatggatatctcaaacttcc |
40762832 |
T |
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| Q |
101 |
tccttctggtgagaaacagaaaaagaagatcgagcttcgcgctgataaggttcttcatgttggtcatgttgatcctgctaaatatcctttgcctaaattg |
200 |
Q |
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| T |
40762833 |
tccttctggtgagaaacagaataagaagatcgagcttcgcgctgataaggttcttcatgttggtcctgttgatcctgctaaatatcctttgcctaaatta |
40762932 |
T |
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| Q |
201 |
agactcactcctgataagaatcttgagttcttgc |
234 |
Q |
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| T |
40762933 |
agactcactcctgataagaatcttgagttcttgc |
40762966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 42910158 - 42910361
Alignment:
| Q |
1 |
ccggtaaccttcaagttatcgtggaagcttcacttgctgatcttggacaacttgttcttactggaacttgtgttgttgttgatggatatctaaaacttcc |
100 |
Q |
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|||||||||||||||||||| | || ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||| |
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| T |
42910158 |
ccggtaaccttcaagttatcatcgacgcttcgcttgctgatcttggacaacttgttcagactggaacttgtgttgttgttgagggacatctcaaacttcc |
42910257 |
T |
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| Q |
101 |
tccttctggtgagaaacagaaaaagaagatcgagcttcgcgctgataaggttcttcatgttggtcatgttgatcctgctaaatatcctttgcctaaattg |
200 |
Q |
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| T |
42910258 |
tccttctggagcgaaac------agaagatcgagcttcgtgctgaagaggttcttcatgttggtcctgttgatcctgctaaatatcctttgcctaaaacg |
42910351 |
T |
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| Q |
201 |
agactcactc |
210 |
Q |
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| T |
42910352 |
agactcactc |
42910361 |
T |
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