View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19551_low_21 (Length: 223)
Name: NF19551_low_21
Description: NF19551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19551_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 32845196 - 32845400
Alignment:
| Q |
1 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32845196 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcaatcagaccatggtcccttattagactctccaagttttggtctattacac |
32845295 |
T |
|
| Q |
101 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32845296 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatgttgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
32845395 |
T |
|
| Q |
201 |
catac |
205 |
Q |
| |
|
||||| |
|
|
| T |
32845396 |
catac |
32845400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 32831915 - 32832119
Alignment:
| Q |
1 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32831915 |
acaagtgtaaaattatcaattgaaagttgatattgggtattgatggatgcaatcagaccatggtcccttattagactctccaagttttggtctattacac |
32832014 |
T |
|
| Q |
101 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32832015 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatgttgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
32832114 |
T |
|
| Q |
201 |
catac |
205 |
Q |
| |
|
||||| |
|
|
| T |
32832115 |
catac |
32832119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 17932728 - 17932524
Alignment:
| Q |
1 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
17932728 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcaatcagaccatggtcccttattagactctccaagttttggactattacac |
17932629 |
T |
|
| Q |
101 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
200 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17932628 |
ttcaaaaatacactgcaacacttaaacccacttccaattccaagtagccaaatgttgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
17932529 |
T |
|
| Q |
201 |
catac |
205 |
Q |
| |
|
||||| |
|
|
| T |
17932528 |
catac |
17932524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 46189227 - 46189052
Alignment:
| Q |
30 |
atattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacacttcaaaactacactgcaacacttagtccc |
129 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||||||| |||||| |||| | |||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
46189227 |
atattgggtattgatgaatgcaatcaccccatggtcccttatgagactcaccaagtattggtctattacacttcaaaacaacactgcaacacttggtccc |
46189128 |
T |
|
| Q |
130 |
acttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagttcatac |
205 |
Q |
| |
|
|||||| ||||||| | |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46189127 |
acttcccattccaacttgccaaacattatcacctttcttcactttttccttggcttccaagtaagcaagttcatac |
46189052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University