View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19551_low_3 (Length: 455)
Name: NF19551_low_3
Description: NF19551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19551_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 23 - 445
Target Start/End: Original strand, 35790011 - 35790407
Alignment:
| Q |
23 |
aagacattataagatcatcaaaatataacaccataatcaaaacagtttcatgtatgataagttgcatataacaattaaccaatttaatgagatagggttt |
122 |
Q |
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| T |
35790011 |
aagacattataagatca---aaatataacaccataatcaaaacagtttcatgtatgataagttgcatataacact-aaccaatttaatgagatagggttt |
35790106 |
T |
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| Q |
123 |
tgtttataatgtgtcacgataagatttcaactcacccctcttttttctattatgcgtcgatacaaattaaaaggaaaagagaaaataaatacagtttgac |
222 |
Q |
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| T |
35790107 |
tgtttaaaatgtgtcacgataagatttcaact------------------tatgcatcgatacaaattaaaaggaaaagagaaaataaaaacagtttgac |
35790188 |
T |
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| Q |
223 |
atcaaagagtaaatccatgcaaaaactgaagaatgaataaaagcaaaaggaaagaaactaacgttgtttttcgttatacgatgatgataatcggtaagcc |
322 |
Q |
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| T |
35790189 |
atcaaagagtaa-tccatgcaaaaactgaagaatgaataaaagcaaaaggaaagaaactaacgttgtttttcgttatacgatgatgataatcggtaagcc |
35790287 |
T |
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| Q |
323 |
attatgacgatgatgttggtttggaacacaaacaaagacagtgttctgagttttctttctctcttgccttccaccaaatattacttcaaatcacttgtac |
422 |
Q |
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| T |
35790288 |
attatgacgatgatgttggtttggaacacaaacaaagacagtgttctgaggtttctttctctcttgccttccaccaaatattacttcaaaccacttg--- |
35790384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 35800337 - 35800394
Alignment:
| Q |
197 |
aaaagagaaaataaatacagtttgacatcaaagagtaaatccatgcaaaaactgaagaa |
255 |
Q |
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| T |
35800337 |
aaaagagaaaataaaaacagtttcacatcaaaga-tcaatccatgcaaaaactgaagaa |
35800394 |
T |
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