View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19551_low_4 (Length: 442)
Name: NF19551_low_4
Description: NF19551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19551_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Original strand, 27292168 - 27292581
Alignment:
| Q |
13 |
taggaccggtttggccaaagatagcattatctgctgcaatggttagatcacaaaccatatgcaatatatgccctcctccaacagcataccctgcaacctg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27292168 |
taggaccggtttggccaaagatagcattatctgctgcaatggttagatcacaaaccatatgcaatatatgccctcctccaacagcataccctgcaacctg |
27292267 |
T |
|
| Q |
113 |
tgttaatgttagcaaataatttgcagctgttgaaggctttgtgcacaaaaaattgagatttggagtaaataaggagagtaccattgcaattactggtttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27292268 |
tgttaatgttagcaaataatttgcagctgttgaaggctttgtgcacaaaaaattgagatttggagtaaataaggagagtaccattgcaattactggtttt |
27292367 |
T |
|
| Q |
213 |
ggaaggcggcgaatctgcacctgtaagagataacttgagccatgagaatcactttcattcacacaaatagaaaaatctggaataaattgatatatacctg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27292368 |
ggaaggcggcgaatctgcacctgtaagagataacttgagccatgagaatcactttcattcacacaaatagaaaaatctggaataaattgatatatacctg |
27292467 |
T |
|
| Q |
313 |
caagtctaacacattaaggcgaccgatattttcatgatcggaataaccatctggagtcctcaaggcttggtcaccaccactacagaatgcatctgttccc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27292468 |
caagtctaacacattaaggcgaccgatattttcatgatcggaataaccatctggagtcctcaaggcttggtcaccaccactacagaatgcatctgttccc |
27292567 |
T |
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| Q |
413 |
tacatcatcaatat |
426 |
Q |
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| T |
27292568 |
tacatcatcaatat |
27292581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 26162823 - 26163066
Alignment:
| Q |
13 |
taggaccggtttggccaaagatagcattatctgctgcaatggttagatcacaaaccatatgcaatatatgccctcctccaacagcataccctgcaacctg |
112 |
Q |
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||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||| |
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| T |
26162823 |
taggaccagtttggccagaggtagcattatctgctgcaatggttagatcacaaaccatatgcaatatatgcccccctccaatagcataccctgctatctg |
26162922 |
T |
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| Q |
113 |
tgttaatgttagcaaataatttgcagctgttg--aaggctttgtgcacaaaaaattgagatttggagtaaa------------taag----gagagtacc |
194 |
Q |
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| ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| || |||| |||| ||||||||| |
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| T |
26162923 |
ttttaatgttagcaaataatttgcagctgctgtgaaggctttgtgcacaaaaaagtgagattaagaataaaggtgcacagaagtaagctaggagagtacc |
26163022 |
T |
|
| Q |
195 |
attgcaattactggttttggaaggcggcgaatctgcacctgtaa |
238 |
Q |
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||| | |||||||||||||||||| ||||||||||||||||||| |
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| T |
26163023 |
attacgattactggttttggaaggtggcgaatctgcacctgtaa |
26163066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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