View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19551_low_5 (Length: 427)
Name: NF19551_low_5
Description: NF19551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19551_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 385
Target Start/End: Original strand, 28735235 - 28735588
Alignment:
| Q |
20 |
tctttaatgtgtttttaattttctgttgttctatgcaatttaaaataggtatccacttttctattatcctaagcttaatcctacgttattgtttgacact |
119 |
Q |
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| T |
28735235 |
tctttaaagtgtttgtaattttctgttgttctatgcaatttaaaataggtatccacttttctattagccta------------cattattgtttgacact |
28735322 |
T |
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| Q |
120 |
gaaattgttcagtactaaaattctttatgtagagaaagtgattcattccccatcctcgcattttaactttgtctttagattttaaagatattccacgtcc |
219 |
Q |
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| T |
28735323 |
gaaattgttaagtactaacattctttatgtagagaaagttattcgttccccatccacgcattttaactttgtctttagattttaatgatattccgcggcc |
28735422 |
T |
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| Q |
220 |
aggaatttacgcatcgattaagttgaagtcgggctaaatctactgcaaatacttttaatatgatgcaattttttcttatgttggagattgtattttgcag |
319 |
Q |
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| T |
28735423 |
aggaatttttgcatcgattaagttgaagtcaggataaatctactgcaaatacttttcatatgatgcaattttttcttatgttggagattgtattttgcag |
28735522 |
T |
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| Q |
320 |
gagaaagcacacagtgatttctacttatttgataggtaaagatgcatacttaatattcccatggtt |
385 |
Q |
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| T |
28735523 |
gagaaagcactcaaagatttctgctaatttgatagggaaagatgcctacttaatatttccaaggtt |
28735588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 352 - 414
Target Start/End: Original strand, 28730842 - 28730904
Alignment:
| Q |
352 |
taggtaaagatgcatacttaatattcccatggtttactgtgttttacattttggttggttttc |
414 |
Q |
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| T |
28730842 |
taggtaaagatgcatacttaatattcccatggtttactgtgttttacattttggttggttttc |
28730904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 34863114 - 34863054
Alignment:
| Q |
20 |
tctttaatgtgtttttaattttctgttgttctatgcaatttaaaataggtatccacttttct |
81 |
Q |
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|||||| |||||||||| ||||||||||||| || |||||||||| |||||| | ||||||| |
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| T |
34863114 |
tctttactgtgtttttagttttctgttgttccatccaatttaaaa-aggtattcccttttct |
34863054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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