View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19551_low_7 (Length: 386)
Name: NF19551_low_7
Description: NF19551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19551_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 812865 - 813222
Alignment:
| Q |
12 |
atgaaaaacacaaaaatgaaattgtaagtttgaaacccacaaatcattcatnnnnnnntcaaataaattgagatttgacaagatcaaaacacaacccaat |
111 |
Q |
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| T |
812865 |
atgaaaaacacaaaaatcaaattgtaagtttgaaacccacaaatcattgataaaaaaatcaaataaattgagatttgacaagatgaaaacacaacccaat |
812964 |
T |
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| Q |
112 |
taaacatgttgaagatatgaaaaagaaatgaagttaaccctgttctactactccattgcataacataacatgattataaatttgtgccatnnnnnnntca |
211 |
Q |
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| T |
812965 |
taaacatgttgaagatatgaaaaagaaatgaagctaaccctgttctactactccattgcgtcacataacatgattataaatttgtgtcataaaaaaatca |
813064 |
T |
|
| Q |
212 |
aactttttctttgacaaactacatataaaccttcaaattcagaataaatatttcttcgtcctgcatgtgtaaactgttcccattcatcatgttacaaaat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
813065 |
aactttttctttgacaaactacatataaaccttcaaattcagaataaatatttcttggtcctggatgtgtaaactgttcccattcatcatgttacaaaat |
813164 |
T |
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| Q |
312 |
gaagaaggtaatcgaaat-caaaaataaagttcccttgccttttccaaaaacaaaaat |
368 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
813165 |
gaagaaggtaatcgaaataaaaaaataaagttcccttgccttttccaaaaacaaaaat |
813222 |
T |
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