View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19552_high_2 (Length: 337)
Name: NF19552_high_2
Description: NF19552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19552_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 2 - 336
Target Start/End: Complemental strand, 33828285 - 33827951
Alignment:
| Q |
2 |
tttttcattaagatatacataagtttttaatttctttttaaccataaacctgtttaagttatatcaccaacttaatcaaataattcctctcatattaact |
101 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828285 |
tttttcgttaagacatacataagtttttaatttctttttaaccataaacctgtttaagttatatcaccaacttaatcaaataattcctctcatattaact |
33828186 |
T |
|
| Q |
102 |
ataattgttttaataacttttcagccattaccggatgatttcaaaactacatcattactgacttcttgcaccgtgtaaaatttatcattgcagcattaaa |
201 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828185 |
ataattgttttaataatttttcagccattaccggatgatttcaaaactacatcattactgacttcttgcaccgtgtaaaatttatcattgcagcattaaa |
33828086 |
T |
|
| Q |
202 |
atctcacttccaattccaaaatcacgcattatcatcattacagtggaagctgttcatctgtcgcatatgatatcgaaaccgttttcccagaaagagtttc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828085 |
atctcacttccaattccaaaatcacgcattatcatcattacagtggaagctgttcatctgtcgcatatgatatcgaaaccgttttcccagaaagagtttc |
33827986 |
T |
|
| Q |
302 |
ttactgtattgattgtatggcctatgatactacac |
336 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |
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| T |
33827985 |
ttactgtattgattgtatggcctataatactacac |
33827951 |
T |
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