View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19552_low_1 (Length: 474)
Name: NF19552_low_1
Description: NF19552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19552_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 231 - 460
Target Start/End: Original strand, 40298089 - 40298296
Alignment:
| Q |
231 |
ctcttccttgtatcattgttaaggaggaatatttattattctatatcaagttatgggacgttgaagggccatttgagctcaattttgacctcaactctag |
330 |
Q |
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| T |
40298089 |
ctcttccttgtatcattgttaaggaggaatatttattattctatatcaagttatgggacgttgaagggccatttga------------cctcaactctag |
40298176 |
T |
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| Q |
331 |
cttgaatggtaagttaattttaagtgtgcaaatgatccttcaaacgcagctctgacttgaaaagtccatccatcttcatgctaatagaagtgtggatgtt |
430 |
Q |
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| T |
40298177 |
cttgaatggtaagttaa------gtgtgcaaatgatccttcaaacgcagctctgacttgaaaagtccatccatcttcatgctaatagaagtgtggatgt- |
40298269 |
T |
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| Q |
431 |
taattgcttgtgccgattgtaccatcaaac |
460 |
Q |
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| T |
40298270 |
---ttgcttgtgccgattgtaccatcaaac |
40298296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 40297875 - 40298031
Alignment:
| Q |
16 |
atccacgagactttgatttgaaccattattggctactacaattacaaagttgattttagnnnnnnnn-agacaaaaaagttgatttcattaattttatta |
114 |
Q |
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| T |
40297875 |
atccacgagactttggtttgaaccattattggctactacaattacaaagttgattttagtttttttttagacaaaaaagttgatttcattaattttatta |
40297974 |
T |
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| Q |
115 |
gctaggtttgtgttaacttgtataagtgcatgttaagagtggttttggaatgtctgg |
171 |
Q |
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| T |
40297975 |
gctaggtttgtgttaacttgtataagggcatgttaagagtggttttggaatgtctgg |
40298031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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