View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19553_high_1 (Length: 632)

Name: NF19553_high_1
Description: NF19553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19553_high_1
NF19553_high_1
[»] chr6 (5 HSPs)
chr6 (253-632)||(11947110-11947482)
chr6 (253-564)||(17716039-17716342)
chr6 (256-564)||(14667094-14667393)
chr6 (559-632)||(14666969-14667042)
chr6 (559-599)||(17715947-17715987)
[»] chr8 (6 HSPs)
chr8 (256-564)||(45349687-45349985)
chr8 (444-632)||(28245033-28245221)
chr8 (253-419)||(28245251-28245417)
chr8 (438-564)||(17630113-17630239)
chr8 (559-632)||(45349562-45349635)
chr8 (559-632)||(17629985-17630061)
[»] chr7 (1 HSPs)
chr7 (313-632)||(9238395-9238704)
[»] chr3 (8 HSPs)
chr3 (1-177)||(27832624-27832800)
chr3 (444-629)||(13851786-13851971)
chr3 (253-419)||(1658097-1658263)
chr3 (438-564)||(1658290-1658412)
chr3 (30-182)||(27827691-27827839)
chr3 (560-632)||(1658465-1658537)
chr3 (108-188)||(27845227-27845306)
chr3 (383-419)||(13851722-13851758)
[»] chr5 (6 HSPs)
chr5 (253-564)||(24046487-24046791)
chr5 (253-419)||(23758815-23758981)
chr5 (253-419)||(23824275-23824441)
chr5 (253-419)||(23758226-23758392)
chr5 (253-419)||(23823682-23823849)
chr5 (559-632)||(24046843-24046916)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 253 - 632
Target Start/End: Complemental strand, 11947482 - 11947110
Alignment:
Q  253 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 352  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11947482 ttcttattctttggcaacatctaacacatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 11947383  T
Q  353 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacagnnnnnnnnnnnnnnnnnngcactgatctaagat 452  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||                  ||||  |||||||||    
T  11947382 aaattaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataacag------gaaaaaaaaaaagcacgaatctaagat 11947289  T
Q  453 aattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaa 552  Q
    |||||  || |||| | ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11947288 aattgcgatgaaatct-agcgaaatcaaaaccgaatgcgcgaaaaatgccaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaa 11947190  T
Q  553 aggatttgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 632  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  11947189 aggatttgtgaagctcgattggtgaagtgtgaagcttgacggtgagattcagttccgtgagaagctcaacggaatgagaa 11947110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 253 - 564
Target Start/End: Complemental strand, 17716342 - 17716039
Alignment:
Q  253 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 352  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17716342 ttcttattctttggcaacatcaaacacatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 17716243  T
Q  353 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacagnnnnnnnnnnnnnnnnnngcactgatctaagat 452  Q
    |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||                  |||| ||||||||||    
T  17716242 aaattaaacacatagaatttcaaaacaaaaatcaaacaatgtgaacgaaatagatgattcataacag--------aaaaataaaagcacggatctaagat 17716151  T
Q  453 aattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaa 552  Q
    |||||  || |||| ||||||||||||||||| || || | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17716150 aattgcgatgaaatctaagcgaaatcaaaaccgaaagcgcaaaaaatgtgaaatcgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaa 17716051  T
Q  553 aggatttgtgaa 564  Q
    ||||||||||||    
T  17716050 aggatttgtgaa 17716039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 256 - 564
Target Start/End: Complemental strand, 14667393 - 14667094
Alignment:
Q  256 ttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacgaaaa 355  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14667393 ttattctttggcaacatcaaagacatgaatttcaaagaaattataaatcacaaatgccaaacagaataagaagaatttgagttaaattgtgaaacgaaaa 14667294  T
Q  356 tcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacagnnnnnnnnnnnnnnnnnngcactgatctaagataat 455  Q
    | |||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||                  |||| |||||||||||||    
T  14667293 ttaaacacgtagaatttcaaaacaaaaatcaaacaatgtgaacgaaatagatgattcataacag---------aaaaaaaaagcacggatctaagataat 14667203  T
Q  456 tgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaagg 555  Q
    ||  || |||| ||||| ||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14667202 tgcgatgaaatctaagcaaaatcaataccgaaagcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaagg 14667103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 559 - 632
Target Start/End: Complemental strand, 14667042 - 14666969
Alignment:
Q  559 tgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 632  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  14667042 tgtgaagctcgatcgatgacgtgtgaagctcgacggtgagattcagttcggtgagaagctcgacagaatgagaa 14666969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 559 - 599
Target Start/End: Complemental strand, 17715987 - 17715947
Alignment:
Q  559 tgtgaagctcgatcggtgaagtgtgaagctcgacggtgaga 599  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17715987 tgtgaagctcgatcggtgaagtgtgaagctcgacggtgaga 17715947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 256 - 564
Target Start/End: Complemental strand, 45349985 - 45349687
Alignment:
Q  256 ttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacgaaaa 355  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45349985 ttattctttggcaacatcaaacacatgaatttaaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacgaaaa 45349886  T
Q  356 tcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacagnnnnnnnnnnnnnnnnnngcactgatctaagataat 455  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||                  |||| |||||||||||||    
T  45349885 ttaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataacag----------aaaaaaaagcacggatctaagataat 45349796  T
Q  456 tgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaagg 555  Q
    ||  || |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45349795 tgcgatgaaatctaagcgaaatcaaaaccgaatgcgcgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaagg 45349696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 444 - 632
Target Start/End: Complemental strand, 28245221 - 28245033
Alignment:
Q  444 atctaagataattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaa 543  Q
    ||||||||||||||  || |||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  28245221 atctaagataattgcgatgaaatctaagcgaaatcaaaaccgaatgcgcgaaaaatgggaaaccgaagaagaattcgagagttttacctgcgtgagcgaa 28245122  T
Q  544 agaggaaaaaggatttgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 632  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28245121 agaggaaaaaggatttgtgaagctcgatcagtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 28245033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 253 - 419
Target Start/End: Complemental strand, 28245417 - 28245251
Alignment:
Q  253 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 352  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28245417 ttcttattctttggcaacatcaaacatatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 28245318  T
Q  353 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacag 419  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28245317 aaattaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataacag 28245251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 438 - 564
Target Start/End: Complemental strand, 17630239 - 17630113
Alignment:
Q  438 gcactgatctaagataattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtg 537  Q
    |||| |||| ||||||||||   | |||| ||||||||||||||||| || |||||||||||||||||  |||||||||||||||||||||||||| |||    
T  17630239 gcacggatcaaagataattgcggtgaaatctaagcgaaatcaaaaccgaaagcacgaaaaatgcgaaaaagaagaagaattcgagagtgttacctgtgtg 17630140  T
Q  538 agcgaaagaggaaaaaggatttgtgaa 564  Q
    |||||||| ||||||||||||||||||    
T  17630139 agcgaaaggggaaaaaggatttgtgaa 17630113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 559 - 632
Target Start/End: Complemental strand, 45349635 - 45349562
Alignment:
Q  559 tgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 632  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45349635 tgtgaagctcgattggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggcatgagaa 45349562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 559 - 632
Target Start/End: Complemental strand, 17630061 - 17629985
Alignment:
Q  559 tgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagtt---ccgtgagaagctcgacggaatgagaa 632  Q
    ||||||||| |||||||||||||||||||| |||| ||||||||||||   | |||||||||| |||||||||||||    
T  17630061 tgtgaagcttgatcggtgaagtgtgaagcttgacgttgagattcagttagacggtgagaagctggacggaatgagaa 17629985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 313 - 632
Target Start/End: Complemental strand, 9238704 - 9238395
Alignment:
Q  313 caaacagaacaagaagaatttgagttaaattgtgaaacgaaaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattc 412  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  9238704 caaacagaacaagaagaatttgagttaaattgtgaaacgaaaattaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaa-agatgattc 9238606  T
Q  413 ataacagnnnnnnnnnnnnnnnnnngcactgatctaagataattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaaga 512  Q
    |||||||                  ||||  ||||||||||||||  || |||| ||||||||||||||||| ||||| |||||||||||||||||||||    
T  9238605 ataacaggaaaaaaaaaa-------gcacgaatctaagataattgcgatgaaatctaagcgaaatcaaaaccgaatgcgcgaaaaatgcgaaaccgaaga 9238513  T
Q  513 agaattcgagagtgttacctgcgtgagcgaaagaggaaaaaggatttgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtga 612  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  9238512 agaattcgag--ttttacctgcgtgagcgaaagaggaaaaaggatttgtgaagctctatccgtgaagtgtgaagctcgacggtgagattcagttccgtga 9238415  T
Q  613 gaagctcgacggaatgagaa 632  Q
    ||||||||||||||||||||    
T  9238414 gaagctcgacggaatgagaa 9238395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 177; Significance: 4e-95; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 27832800 - 27832624
Alignment:
Q  1 cacaggcaaataattaataatgatatgataaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcggaccttaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27832800 cacaggcaaataattaataatgatatgataaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcggaccttaag 27832701  T
Q  101 aaattcaattttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattc 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27832700 aaattcaattttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattc 27832624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 444 - 629
Target Start/End: Original strand, 13851786 - 13851971
Alignment:
Q  444 atctaagataattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaa 543  Q
    ||||||||||||||| || |||| ||||||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13851786 atctaagataattgtgatgaaatctaagcgaaatcaaaactgaatgcgcgaaaaatgtgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaa 13851885  T
Q  544 agaggaaaaaggatttgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatga 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13851886 agaggaaaaaggatttgtgaagctcgatcggtgaagtgtgaagctcggcggtgagattcagttccgtgagaagctcgacggaatga 13851971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 253 - 419
Target Start/End: Original strand, 1658097 - 1658263
Alignment:
Q  253 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 352  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1658097 ttcttattctttggcaacatcaaacacatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 1658196  T
Q  353 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacag 419  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  1658197 aaattaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaatagatgactcataacag 1658263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 438 - 564
Target Start/End: Original strand, 1658290 - 1658412
Alignment:
Q  438 gcactgatctaagataattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtg 537  Q
    |||| |||||||||||||||  || |||| |||||||||||||||  |||||| |||||||||||||||||||||||||||||||  |||||||||| ||    
T  1658290 gcacggatctaagataattgcgatgaaatctaagcgaaatcaaaa--aaatgcgcgaaaaatgcgaaaccgaagaagaattcgag--tgttacctgcttg 1658385  T
Q  538 agcgaaagaggaaaaaggatttgtgaa 564  Q
    |||||||||||||||||||||||||||    
T  1658386 agcgaaagaggaaaaaggatttgtgaa 1658412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 27827839 - 27827691
Alignment:
Q  30 aaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcggaccttaagaaattcaattttcgtgcacacagcaatgc 129  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||||||    ||||| ||||||||||||||||||||||     
T  27827839 aaaaatgtaggtcgttaccaggccctaaaatcaaatcaaagatcatagagggcagacatgcggacct---aaaatttaattttcgtgcacacagcaatga 27827743  T
Q  130 ttccttcattgttttcatccagagcatcggcttattgtgcacgaattcgttta 182  Q
    ||||||||||  ||   |||||| ||||||||||||||||||||||| |||||    
T  27827742 ttccttcatt-cttaattccagaccatcggcttattgtgcacgaatttgttta 27827691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 560 - 632
Target Start/End: Original strand, 1658465 - 1658537
Alignment:
Q  560 gtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 632  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1658465 gtgaagctcgatcggtgaagtatgaagctcgacggtgagattcagttccgtgagaagctcgacagaatgagaa 1658537  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 27845306 - 27845227
Alignment:
Q  108 attttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattcgtttataattc 188  Q
    ||||||||||||||| ||||||||||||||||||||| || |||||||||| ||||||||||||  |||| ||||||||||    
T  27845306 attttcgtgcacacaacaatgcttccttcattgtttt-attcagagcatcgacttattgtgcacatattcatttataattc 27845227  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 419
Target Start/End: Original strand, 13851722 - 13851758
Alignment:
Q  383 ttcaaacaatgtgaatgaaatagatgattcataacag 419  Q
    |||| |||||||||| |||||||||||||||||||||    
T  13851722 ttcagacaatgtgaacgaaatagatgattcataacag 13851758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 169; Significance: 3e-90; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 253 - 564
Target Start/End: Original strand, 24046487 - 24046791
Alignment:
Q  253 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 352  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24046487 ttcttattctttggcaacatcaaacacatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 24046586  T
Q  353 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacagnnnnnnnnnnnnnnnnnngcactgatctaagat 452  Q
    |||| |||||||||  |||||||||||||| |||||||||||||| ||||||||||||||||||| |                  ||||  |||||||||    
T  24046587 aaattaaacacataacatttcaaaacaaaaatcaaacaatgtgaacgaaatagatgattcataactg-------aaaaaaaaaaagcacgaatctaagat 24046679  T
Q  453 aattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaa 552  Q
    |||||  || |||| |||||||||| |||| | || ||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24046680 aattgcgatgaaatctaagcgaaataaaaaacgaaggcgtgaaaaatgcgaaaccgaaaaagaattcgagagtgttacctgcgtgagcgaaagaggaaaa 24046779  T
Q  553 aggatttgtgaa 564  Q
    ||||||| ||||    
T  24046780 aggatttatgaa 24046791  T

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Target: chr5; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 253 - 419
Target Start/End: Complemental strand, 23758981 - 23758815
Alignment:
Q  253 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 352  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23758981 ttcttattctttggcaacatcaaacacatgaatttcaaataaattataaatcacaaatgccgaacagaacaagaagaatttgagttaaattgtgaaacga 23758882  T
Q  353 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacag 419  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  23758881 aaattaaacacatagaatatcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataacag 23758815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 253 - 419
Target Start/End: Complemental strand, 23824441 - 23824275
Alignment:
Q  253 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 352  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23824441 ttcttattctttggcaacatcaaacacatgaatttcaaataaattataaatcacaaatgccgaacagaacaagaagaatttgagttaaattgtgaaacga 23824342  T
Q  353 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacag 419  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  23824341 aaattaaacacatagaatatcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataacag 23824275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 253 - 419
Target Start/End: Complemental strand, 23758392 - 23758226
Alignment:
Q  253 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 352  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23758392 ttcttattctttggcaacatcaaacacatgaatttcaaataaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacaa 23758293  T
Q  353 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacag 419  Q
    |||| |||||||||||||||||||| |||| | |||||||||||| |||||||||||||||||||||    
T  23758292 aaattaaacacatagaatttcaaaaaaaaaattaaacaatgtgaacgaaatagatgattcataacag 23758226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 253 - 419
Target Start/End: Complemental strand, 23823849 - 23823682
Alignment:
Q  253 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 352  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23823849 ttcttattctttggcaacatcaaacacatgaatttcaaataaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacaa 23823750  T
Q  353 aaatcaaacacatagaatttc-aaaacaaaattcaaacaatgtgaatgaaatagatgattcataacag 419  Q
    |||| |||||||||||||||| |||| |||| | |||||||||||| |||||||||||||||||||||    
T  23823749 aaattaaacacatagaatttcaaaaaaaaaaattaaacaatgtgaacgaaatagatgattcataacag 23823682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 559 - 632
Target Start/End: Original strand, 24046843 - 24046916
Alignment:
Q  559 tgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 632  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  24046843 tgtgaagctcgatcggtgaagtgtgaagctcgatggtgagattcagttcggtgagaagctcgacggaatgagaa 24046916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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